Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1318 ATGAAGCTCATCCCCTTCCTTCCATGGCTGAACCTCCACATGGCCCTCTTCTTCTTCTTCTTCTTCCTTGCTTCTTCTTCACTTCTTCATTCATCCCCTGCCTCTTCACTTCCCCACAATGAAGGACGAGCGCTTATGTCAATCAAGGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTTGACTGGGATGACGATCACAACCACGATTTCTGTTCATGGCGTGGAGTTTTCTGCGACAATGTTAGCCTTTCTGTTGCTGCTTTGAACTTGTCCAACTTGAATCTGGGTGGGGAGATTTCACCATCCATTGGAGATTTGAGAAACTTACAGTCAATTGACTTTCAAGGGAATAAACTGACTGGCCAAATCCCTGATGAGATCGGTAACTGTGGTCTTCTTGTCCATTTGGACTTGTCTGATAATTTGCTCTATGGAGACATCCCCTTCACGGTTTCAAAGCTAAAGCAGCTCGAGTTTTTAAATATGAAGAACAATCAGTTGACCGGTCCGATTCCTTCAACCTTAACCCAGATTCCCAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAAGTTCTGCAATATCTTGGATTACGAGGGAACTTTTTGACAGGGTCGTTGTCTTCCGATATGTGTCAATTGACTGGCTTGTGGTATTTTGATGTAAGGGGAAATAATCTGACTGGAACAATACCGGATAGCATAGGAAACTGTACCAGTTTTGAAATTCTGGATATATCGTACAATCAGATCTCGGGAGAGATTCCATACAACATTGGATTTCTACAAGTGGCCACTTTATCATTACAGGGAAATAGGTTGAGTGGTAAGATTCCTGATGTCATTGGATTGATGCAGGCCCTTGCTGTTCTGGATTTGAGTGAGAATGAGCTTGAAGGACCAATACCGCCAATACTTGGCAACTTGTCCTACACAGGAAAATTGTATCTACATGGAAACAAGTTGACTGGGTCAATTCCTCCTGAGCTGGGCAATATGTCAAAACTTAGCTACTTGCAACTAAATGATAACCAGTTGGTTGGCACAATTCCTTCTGAACTTGGGAAATTGGATCAGTTGTTTGAATTAAATCTTGCCAATAATTATCTTGAAGGACCCATCCCTCATAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCACGGAAACAATCTTAATGGATCAATCCCTTTGGGTTTCCAAAATCTGGAGAGCTTGACCTATTTGAACCTTTCGGCAAACAACTTCAAAGGCAGGATTCCCATGGAGCTGGGGCGCATAGTAAACCTCGATACATTTTGGCTTAAAGTTTTTGTTTCATCCAGGGATCTATCTTGCAATTACTTCTTGGGTCCGGTTCCTGCTTCTATTGGTGATTTGGAACACCTTCTTAGCCTCAATTTGAGCAATAACCGACTCGTCGGGCCGTTGCCGGCAGAATTTGGGAATCTCCGAAGTGTTCAGACTATTGATATGTCATTCAACAACTTTTCTGGTAGCATACCCATGGAGTTGGGTCAACTGCAAAATATTATCTCCCTCATTTTGAACAACAACCATTTTCAAGGGAAAATACCTGATCAGCTGACTAATTGTTTTAGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAATTTCTCTCGATTCGAACCATATAGCTTTATCGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGGTCGATCTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGACAGTGGTTGTTTGTATGACATTTGGATTCATAGTATTGTTGTCGATGGTTATAATTGCCGTTTACAAGTCGAATCCCTCGAAGCAATTGATGAAGGGTTCAAGCAAGACCGGGCAAGTTCCTCCAAATCTTGTGGTACTTCATATGGATATGGCTATTCACACCTTTGAGGACATTATGAGAATGACTGAGAATCTAAGCGAGAAGTACATTATTGGTTACGGAGCTTCTAGCACTGTGTACAAATGTTTACTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTATAATCACTACGCACACAATTTACGGGAGTTTGAGACCGAACTCGAAACCATTGGTAGTATCAGACATAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTGCTTCATGGGACAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGTCTGAAAATTGCGGTTGGAGCTGCGCAAGGGCTTGCATATCTTCACCATGATTGTAACCCCCGAATCATTCACCGGGATGTCAAGTCTTCAAATATTCTACTGGATGAAAATTTTGAGGCCCATCTTTCTGATTTCGGGATTGCCAAATGCATCCCAACTGCCAAAACACACGCGTCGACTTATGTGCTTGGAACAATTGGCTACATTGATCCGGAGTATGCCCGGACCTCCCGGCTTAACGAGAAGTCTGATGTTTATAGCTTTGGCATTGTTCTTCTTGAACTACTGACCGGGAAGAAAGCTGTGGATGATGAGTCCAATTTGCATCAGCTGATATTGTCCAAGACTGATAACAATACCGTGATGGAAGCTGTTGATCCTGAGGTTTCAGTCACCTGCATTGATTTAGCCCATGTTCGAAAAATGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCCCTCCGAACGGCCAACCATGCATGAAGTTGCACGAGTATTGATCTCCCTCCAGCCACCACCCCCACCTACTGTGAAACAAACTTCATTCCCCACGAAAACGTTGGATTATGCACAGTTTGTGATCGAAAAGGGTCAGAATCGAAACTTGAAAGGGCAGGAGGAGCAGCAGAAGTCAGATGTGAATACTTCGGATGCTCGGTGGTTTGTTCGGTTTGGGGAAGTGATGTCTGAACAACACAGTTTGAATCAATAA 3024 42.96 MKLIPFLPWLNLHMALFFFFFFLASSSLLHSSPASSLPHNEGRALMSIKASFSNVANVLLDWDDDHNHDFCSWRGVFCDNVSLSVAALNLSNLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDIPFTVSKLKQLEFLNMKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLSGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGSIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNNLNGSIPLGFQNLESLTYLNLSANNFKGRIPMELGRIVNLDTFWLKVFVSSRDLSCNYFLGPVPASIGDLEHLLSLNLSNNRLVGPLPAEFGNLRSVQTIDMSFNNFSGSIPMELGQLQNIISLILNNNHFQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPYSFIGNPLLCGNWLGSICGPYMEKSRAMLSRTVVVCMTFGFIVLLSMVIIAVYKSNPSKQLMKGSSKTGQVPPNLVVLHMDMAIHTFEDIMRMTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYAHNLREFETELETIGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGTGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLILSKTDNNTVMEAVDPEVSVTCIDLAHVRKMFQLALLCTKHNPSERPTMHEVARVLISLQPPPPPTVKQTSFPTKTLDYAQFVIEKGQNRNLKGQEEQQKSDVNTSDARWFVRFGEVMSEQHSLNQ 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18630191 18635917 - CmPI595203_09g013180.1 Cmu09g1318 424547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1318 1007 SUPERFAMILY RNI-like 243 588 - -
Cmu09g1318 1007 SMART serkin_6 671 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1318 1007 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Cmu09g1318 1007 Pfam Leucine Rich Repeat 229 250 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 180 199 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 372 393 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 419 439 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 326 345 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 548 565 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 254 274 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 300 321 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 347 369 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 108 130 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Pfam Leucine Rich Repeat 156 176 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 747 947 - -
Cmu09g1318 1007 PANTHER OS04G0122200 PROTEIN 318 935 IPR051809 -
Cmu09g1318 1007 Gene3D Transferase(Phosphotransferase) domain 1 747 944 - -
Cmu09g1318 1007 Gene3D Phosphorylase Kinase; domain 1 635 746 - -
Cmu09g1318 1007 SUPERFAMILY RNI-like 67 315 - -
Cmu09g1318 1007 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Cmu09g1318 1007 ProSiteProfiles Leucine-rich repeat profile. 180 202 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 Gene3D Ribonuclease Inhibitor 451 593 IPR032675 -
Cmu09g1318 1007 Gene3D Ribonuclease Inhibitor 363 450 IPR032675 -
Cmu09g1318 1007 Gene3D Ribonuclease Inhibitor 276 362 IPR032675 -
Cmu09g1318 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1318 1007 ProSiteProfiles Protein kinase domain profile. 671 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1318 1007 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 38 202 - -
Cmu09g1318 1007 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 203 312 - -
Cmu09g1318 1007 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 642 746 - -
Cmu09g1318 1007 Gene3D Ribonuclease Inhibitor 201 275 IPR032675 -
Cmu09g1318 1007 Pfam Protein kinase domain 674 934 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1318 1007 CDD STKc_IRAK 677 940 - -
Cmu09g1318 1007 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 313 595 - -
Cmu09g1318 1007 Pfam Leucine rich repeat 457 511 IPR001611 GO:0005515(InterPro)
Cmu09g1318 1007 SMART LRR_typ_2 106 130 IPR003591 -
Cmu09g1318 1007 SMART LRR_typ_2 297 321 IPR003591 -
Cmu09g1318 1007 SMART LRR_typ_2 417 441 IPR003591 -
Cmu09g1318 1007 SMART LRR_typ_2 178 202 IPR003591 -
Cmu09g1318 1007 SMART LRR_typ_2 474 497 IPR003591 -
Cmu09g1318 1007 SMART LRR_typ_2 522 546 IPR003591 -
Cmu09g1318 1007 SMART LRR_typ_2 345 369 IPR003591 -
Cmu09g1318 1007 SMART LRR_typ_2 154 177 IPR003591 -
Cmu09g1318 1007 SMART LRR_typ_2 226 250 IPR003591 -
Cmu09g1318 1007 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524(InterPro)
Cmu09g1318 1007 SUPERFAMILY Protein kinase-like (PK-like) 653 938 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1615 Cmu-Chr5:25928605 Cmu09g1318 Cmu-Chr9:18630191 2.10E-18 dispersed
Cmu09g1318 Cmu-Chr9:18630191 Cmu11g1709 Cmu-Chr11:29264261 1.80E-69 dispersed
Cmu09g1318 Cmu-Chr9:18630191 Cmu05g0390 Cmu-Chr5:3338379 1.20E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75797 PF00069 Pkinase 3.00E-42 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1318 K20718 - csv:101213139 1826.6