Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g1346 | TTTCCAATCAAGTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAGGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCTGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGTTCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA | 1167 | 46.53 | FPIKFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 19718583 | 19721777 | - | CmPI595203_09g013460.1 | Cmu09g1346 | 424575 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g1346 | 388 | PANTHER | ACTIN | 19 | 380 | IPR004000 | - | |
Cmu09g1346 | 388 | SMART | actin_3 | 18 | 388 | IPR004000 | - | |
Cmu09g1346 | 388 | FunFam | Major actin | 272 | 351 | - | - | |
Cmu09g1346 | 388 | ProSitePatterns | Actins signature 1. | 66 | 76 | IPR004001 | - | |
Cmu09g1346 | 388 | SUPERFAMILY | Actin-like ATPase domain | 17 | 166 | IPR043129 | - | |
Cmu09g1346 | 388 | PRINTS | Actin signature | 153 | 172 | IPR004000 | - | |
Cmu09g1346 | 388 | PRINTS | Actin signature | 74 | 96 | IPR004000 | - | |
Cmu09g1346 | 388 | PRINTS | Actin signature | 39 | 48 | IPR004000 | - | |
Cmu09g1346 | 388 | PRINTS | Actin signature | 128 | 141 | IPR004000 | - | |
Cmu09g1346 | 388 | PRINTS | Actin signature | 62 | 73 | IPR004000 | - | |
Cmu09g1346 | 388 | PRINTS | Actin signature | 249 | 265 | IPR004000 | - | |
Cmu09g1346 | 388 | CDD | NBD_sugar-kinase_HSP70_actin | 21 | 194 | - | - | |
Cmu09g1346 | 388 | FunFam | Actin, alpha skeletal muscle | 14 | 182 | - | - | |
Cmu09g1346 | 388 | Gene3D | - | 151 | 351 | - | - | |
Cmu09g1346 | 388 | ProSitePatterns | Actins signature 2. | 369 | 377 | IPR004001 | - | |
Cmu09g1346 | 388 | ProSitePatterns | Actins and actin-related proteins signature. | 117 | 129 | IPR020902 | - | |
Cmu09g1346 | 388 | Gene3D | Actin; Chain A, domain 4 | 193 | 284 | - | - | |
Cmu09g1346 | 388 | FunFam | Actin, muscle | 193 | 284 | - | - | |
Cmu09g1346 | 388 | SUPERFAMILY | Actin-like ATPase domain | 160 | 388 | IPR043129 | - | |
Cmu09g1346 | 388 | Gene3D | - | 21 | 382 | - | - | |
Cmu09g1346 | 388 | FunFam | Putative actin-related protein 5 | 352 | 380 | - | - | |
Cmu09g1346 | 388 | Pfam | Actin | 16 | 388 | IPR004000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu06g1548 | Cmu-Chr6:26728523 | Cmu09g1346 | Cmu-Chr9:19718583 | 3.70E-75 | dispersed | |
Cmu09g0389 | Cmu-Chr9:3744793 | Cmu09g1346 | Cmu-Chr9:19718583 | 6.60E-55 | dispersed | |
Cmu09g1346 | Cmu-Chr9:19718583 | Cmu10g2489 | Cmu-Chr10:31536873 | 1.10E-211 | dispersed | |
Cmu09g1346 | Cmu-Chr9:19718583 | Cmu01g1515 | Cmu-Chr1:28733294 | 1.60E-212 | transposed | |
Cmu09g1346 | Cmu-Chr9:19718583 | Cmu02g0070 | Cmu-Chr2:722978 | 1.60E-212 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g1346 | K10355 | - | csv:101214459 | 755.362 |