Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1346 TTTCCAATCAAGTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAGGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCTGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGTTCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA 1167 46.53 FPIKFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19718583 19721777 - CmPI595203_09g013460.1 Cmu09g1346 424575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1346 388 PANTHER ACTIN 19 380 IPR004000 -
Cmu09g1346 388 SMART actin_3 18 388 IPR004000 -
Cmu09g1346 388 FunFam Major actin 272 351 - -
Cmu09g1346 388 ProSitePatterns Actins signature 1. 66 76 IPR004001 -
Cmu09g1346 388 SUPERFAMILY Actin-like ATPase domain 17 166 IPR043129 -
Cmu09g1346 388 PRINTS Actin signature 153 172 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 74 96 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 39 48 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 128 141 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 62 73 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 249 265 IPR004000 -
Cmu09g1346 388 CDD NBD_sugar-kinase_HSP70_actin 21 194 - -
Cmu09g1346 388 FunFam Actin, alpha skeletal muscle 14 182 - -
Cmu09g1346 388 Gene3D - 151 351 - -
Cmu09g1346 388 ProSitePatterns Actins signature 2. 369 377 IPR004001 -
Cmu09g1346 388 ProSitePatterns Actins and actin-related proteins signature. 117 129 IPR020902 -
Cmu09g1346 388 Gene3D Actin; Chain A, domain 4 193 284 - -
Cmu09g1346 388 FunFam Actin, muscle 193 284 - -
Cmu09g1346 388 SUPERFAMILY Actin-like ATPase domain 160 388 IPR043129 -
Cmu09g1346 388 Gene3D - 21 382 - -
Cmu09g1346 388 FunFam Putative actin-related protein 5 352 380 - -
Cmu09g1346 388 Pfam Actin 16 388 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1548 Cmu-Chr6:26728523 Cmu09g1346 Cmu-Chr9:19718583 3.70E-75 dispersed
Cmu09g0389 Cmu-Chr9:3744793 Cmu09g1346 Cmu-Chr9:19718583 6.60E-55 dispersed
Cmu09g1346 Cmu-Chr9:19718583 Cmu10g2489 Cmu-Chr10:31536873 1.10E-211 dispersed
Cmu09g1346 Cmu-Chr9:19718583 Cmu01g1515 Cmu-Chr1:28733294 1.60E-212 transposed
Cmu09g1346 Cmu-Chr9:19718583 Cmu02g0070 Cmu-Chr2:722978 1.60E-212 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1346 K10355 - csv:101214459 755.362