Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1346 TTTCCAATCAAGTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAGGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCTGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGTTCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA 1167 46.53 FPIKFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19718583 19721777 - CmPI595203_09g013460.1 Cmu09g1346 424575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1346 388 PANTHER ACTIN 19 380 IPR004000 -
Cmu09g1346 388 SMART actin_3 18 388 IPR004000 -
Cmu09g1346 388 FunFam Major actin 272 351 - -
Cmu09g1346 388 ProSitePatterns Actins signature 1. 66 76 IPR004001 -
Cmu09g1346 388 SUPERFAMILY Actin-like ATPase domain 17 166 IPR043129 -
Cmu09g1346 388 PRINTS Actin signature 153 172 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 74 96 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 39 48 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 128 141 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 62 73 IPR004000 -
Cmu09g1346 388 PRINTS Actin signature 249 265 IPR004000 -
Cmu09g1346 388 CDD NBD_sugar-kinase_HSP70_actin 21 194 - -
Cmu09g1346 388 FunFam Actin, alpha skeletal muscle 14 182 - -
Cmu09g1346 388 Gene3D - 151 351 - -
Cmu09g1346 388 ProSitePatterns Actins signature 2. 369 377 IPR004001 -
Cmu09g1346 388 ProSitePatterns Actins and actin-related proteins signature. 117 129 IPR020902 -
Cmu09g1346 388 Gene3D Actin; Chain A, domain 4 193 284 - -
Cmu09g1346 388 FunFam Actin, muscle 193 284 - -
Cmu09g1346 388 SUPERFAMILY Actin-like ATPase domain 160 388 IPR043129 -
Cmu09g1346 388 Gene3D - 21 382 - -
Cmu09g1346 388 FunFam Putative actin-related protein 5 352 380 - -
Cmu09g1346 388 Pfam Actin 16 388 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1346 K10355 - - csv:101214459 755.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1548 Cmu-Chr6:26728523 Cmu09g1346 Cmu-Chr9:19718583 3.70E-75 dispersed
Cmu09g0389 Cmu-Chr9:3744793 Cmu09g1346 Cmu-Chr9:19718583 6.60E-55 dispersed
Cmu09g1346 Cmu-Chr9:19718583 Cmu10g2489 Cmu-Chr10:31536873 1.10E-211 dispersed
Cmu09g1346 Cmu-Chr9:19718583 Cmu01g1515 Cmu-Chr1:28733294 1.60E-212 transposed
Cmu09g1346 Cmu-Chr9:19718583 Cmu02g0070 Cmu-Chr2:722978 1.60E-212 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.7e-215 743.0
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.7e-215 743.0
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 5.0e-214 740.3
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.5e-214 740.0
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.2e-213 736.5
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 8.8e-211 729.6
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.0e-214 742.7
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.5e-214 740.0
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.5e-215 743.8
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.4e-213 736.1
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.4e-213 736.1
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 719.5
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.7e-210 726.1
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.2e-209 723.0
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cmu01g1515 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.2e-217 749.6
Cmu02g0070 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.2e-217 749.6
Cmu09g1346 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cmu10g2489 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.5e-214 740.0
Cmu04g0858 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cmu02g2013 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cmu07g0369 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cmu09g1894 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.6e-212 734.2
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.7e-57 216.5
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT2G19760 72.5 3.7e-55 211.1
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.3e-54 207.2
Cmu11g0198 . 1 111 Cytoskeleton Gene Families AT2G19760 79.3 1.1e-48 189.5
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 8.4e-52 199.9
Cmu11g0198 . 1 111 Cytoskeleton Gene Families AT4G29350 79.3 1.6e-47 185.7
Cmu11g0198 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Cmu11g0197 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cmu09g0024 . 324 454 Cytoskeleton Gene Families AT4G29340 73.9 3.1e-57 218.0
Cmu11g1503 . 1 131 Cytoskeleton Gene Families AT4G29340 73.1 2.4e-54 208.4
Cmu07g1316 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.1e-52 200.7
Cmu11g0198 . 1 112 Cytoskeleton Gene Families AT4G29340 67.0 7.3e-43 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276