Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1355 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCAGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 801 46.57 MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20187367 20188167 - CmPI595203_09g013550.1 Cmu09g1355 424584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1355 266 MobiDBLite consensus disorder prediction 250 266 - -
Cmu09g1355 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677(InterPro)
Cmu09g1355 266 MobiDBLite consensus disorder prediction 55 76 - -
Cmu09g1355 266 MobiDBLite consensus disorder prediction 236 266 - -
Cmu09g1355 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 251 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cmu09g1355 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982(InterPro)
Cmu09g1355 266 MobiDBLite consensus disorder prediction 1 39 - -
Cmu09g1355 266 MobiDBLite consensus disorder prediction 1 76 - -
Cmu09g1355 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982(InterPro)
Cmu09g1355 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2276 Cmu-Chr3:31474871 Cmu09g1355 Cmu-Chr9:20187367 2.20E-62 dispersed
Cmu06g1832 Cmu-Chr6:29258265 Cmu09g1355 Cmu-Chr9:20187367 9.70E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6866 PF00125 Histone 6.00E-18 CL0012 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1355 K08066 - csv:101213813 417.157