Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1472 ATGTCCTTCGTTTGGAGCGCTGCGACACTTCCTCATTTTTTGATAGCTTCAATTTTTGGAGCACTGCAGTGCTTAAAGGTAATGCAGTCAAAATTCACCCTCTCGGGTTTTTGTGCCATGGTTTTCGTTTCCAGTTTTCCCTTCGAGTTCCACCAGCCTTGCAACAGCGTAAGATTCTCCCCAGTCCCTTGTGTCGACCTTCTCATTTCCCTCACCTCACCGTACGCTACTTTGCCCCCTCGCCGTCGAAATCCCTCACGGCGGTTCTCTCATTACAGTCCATCGATTTCCAGTGGCAAACTCTCTCAGAGCTTCTCGACAATGGCTTCTCATTCCCCTAACCTCGAGTGTCGGATGTACGAAGCAAAGTACCCCGAGGTCGACATGGCCGTCATGATCCAGGTCAAAAACATCGCCGACATGGGCGCTTACGTCTCCCTTCTTGAGTACAACAACATTGAGGGTATGATTCTATTCTCCGAGCTCTCTCGCCGTCGAATTCGTAGTGTCAGCAGCTTAATTAGGGTCGGTCGAATCGAGCCCGTCATGGTCCTCAGGGTCGATAAGGAGAAGGGTTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTCGCTGAGACTATGAACATTGATTTGGAGGACTTGTATATCCATGTTGGCTGGCCTTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGATCATTGTAACTGACCCTGACTCGGTGTTGAATTCTCTCACCCGTGAAGTAAAGGAAGCTGGTCCTGATGGACAGGAGGTAACTAAGATAGTTCCTGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCGTTGAAGGTCCGAGCTGATATTGAGATGAAGTGTTTCCAATTTGATGGCGTTCTTCACATTAAGGAAGCAATGCGTAAAGCTGAAGCTGCTGGAAACGATGATTGTCCTGTTAAAATTAAGTTGGTTGCTCCTCCCCTCTATGTCCTTACTACTCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCAATCATGGCTTGCACCGAGGCAATTGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGACACCCAGAGCGGTGAGTGAAAGAGATGACAAGTTGCTTGCCGAGCACATGGCGAAGCTACGACAAGATAATGAAGAAATCAGCGGAGATGAGGATAGCGAGGAAGAGGAAGACACGGGAATGGGAGAAGTCGATGTTGAGAATGCAGGTTCTGGGATCACTGACATTGTAGCATCTTCAAAGGACTCTTTCAGCTCTGGTCCCTCTCTCATTCTCGTGATCATTTTGTTGGGTTTGCAGGTTGTCAATGGTGTTTTTTTCTCTCTTTTGTGCGTTGAGTAA 1470 46.8 MSFVWSAATLPHFLIASIFGALQCLKVMQSKFTLSGFCAMVFVSSFPFEFHQPCNSVRFSPVPCVDLLISLTSPYATLPPRRRNPSRRFSHYSPSISSGKLSQSFSTMASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIRVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEVTKIVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIMACTEAIEHHKGKLVVKETPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGSGITDIVASSKDSFSSGPSLILVIILLGLQVVNGVFFSLLCVE 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26307135 26314346 - CmPI595203_09g014720.1 Cmu09g1472 424701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1472 489 SUPERFAMILY eIF2alpha middle domain-like 201 306 IPR024054 -
Cmu09g1472 489 Pfam S1 RNA binding domain 125 199 IPR003029 GO:0003676(InterPro)
Cmu09g1472 489 Gene3D - 113 201 IPR012340 -
Cmu09g1472 489 Coils Coil 413 433 - -
Cmu09g1472 489 Gene3D EIF_2_alpha 312 434 IPR024055 -
Cmu09g1472 489 ProSiteProfiles S1 domain profile. 128 199 IPR003029 GO:0003676(InterPro)
Cmu09g1472 489 MobiDBLite consensus disorder prediction 418 443 - -
Cmu09g1472 489 MobiDBLite consensus disorder prediction 423 439 - -
Cmu09g1472 489 SUPERFAMILY Nucleic acid-binding proteins 122 204 IPR012340 -
Cmu09g1472 489 SUPERFAMILY eIF-2-alpha, C-terminal domain 310 426 IPR024055 -
Cmu09g1472 489 FunFam Eukaryotic translation initiation factor 2 subunit alpha 114 201 - -
Cmu09g1472 489 SMART S1_6 126 199 IPR003029 GO:0003676(InterPro)
Cmu09g1472 489 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 113 440 IPR011488 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(PANTHER)|GO:0033290(PANTHER)|GO:0043022(PANTHER)
Cmu09g1472 489 Pfam Eukaryotic translation initiation factor 2 alpha subunit 237 367 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)
Cmu09g1472 489 CDD S1_IF2_alpha 125 200 IPR044126 GO:0003723(InterPro)
Cmu09g1472 489 Gene3D Translation initiation factor 2; subunit 1; domain 2 202 279 IPR024054 -
Cmu09g1472 489 FunFam Eukaryotic translation initiation factor 2 subunit alpha 202 306 - -
Cmu09g1472 489 FunFam Eukaryotic translation initiation factor 2 subunit 1 312 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0247 Cmu-Chr8:5573476 Cmu09g1472 Cmu-Chr9:26307135 9.90E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1472 K03237 - csv:101209681 632.098