Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1489 ATGAGCCACAGTCCGACATCGTGCGTAGGGACACAGTCACCGATTGTCACCACCTCTGTTTGCTTGATTGTCTGCTCATCGTTTCTGGTCGTCGCAGCTATTCTGTCGTTTTTGGACCAACCTCTTTATCTTCGTCATGCCGCCGGGCGTCGTTTTGGTCGTCGTTTCCATCCACCACCGGAAGCCACCATTTGCTCGCTAGAAAAGAAAGCTACGGCAACTGAGCAATGGATTGCAGAGCTGGAGTCATTGTTTGAATACCTGAATTGTGAGGACCATTTTAAGGTCAGAGGAGTAGTTTTCATGCTTCGAGACGAGGCGCGAATGTGGTGGAGATCCATTGAAGCCTCAGAAGATCATGCCGAAGGACCCATGACTTGGGCAAGGTTTAAGGACCTCCTATACGACTACTATTTTCCCGACAAAGTGAAGGACGACAAGGAAATAGAGTTCCTGCATCTAACCGAGTTGTCTTGTTTTGCACCCGACCTGGTGAGTACGTCAGAGAGGAGGATTAAAAGGTTCATTAGGGGCTTGCGCGAGGAAATTAGAGGTGCGGTCGCCTTAAAGGAGCCAATGACTTTTGCTGCAGCACTTAAGGCGGCACTGATCATGGACAAAAATATGGCCAAGAAACCTCAGGTGACACACTCACGTTGGGAGGTTGGCGCCTCATCTAGATTTAAAAGAAAGTCTCCCCCAGCTTCGTCAGATCAAACTTCCAAGGCCCATCGTCTGGCCTCGGGGCAAGCTACCACCCTCCCATTGTGCGGCTCATGCAACAAGCGTCACTTGGAGCAGTGCTGGCTAGGCCAGAGCATTTGCTTTAAGTGTGGAAAGGAAGGAGGGAAACAAAAGGCACGCATCTTTGCACTGAAGAAGGAGGAGGCTGCAGATACGAACGCAATGGTTACAGCGCCTTATTATCAAATGATCTGTGGAGAGATGAGAAGCAATGAAATGGGGAGAGCAACGTTGATGTTTTCAGCGTTTTCTCCTTTCCTGCGCTTAATTTTGGCTATGGCTTTCGTTTTACGGGTGTCTGCAAATGGGGAAGGTGATGCCCTAAATGCCTTCAAGTTGAGTTTGGTTGACCCCAACAATGTCTTGCAAAGTTGGAATACCATTCTTATGAATCCTTGCACATGGTTTCATGTTACATGTGATGAAAAAGAAAGTGTTATACGTGTTGATCTTGGTAATGCCAATCTGTCTGGAAAACTGGTTCCACAGCTTGATCAACTCACAAACTTGCGGTACTTGGAACTCTACAGCAATAATATCAGCGGAACAATTCCAGAAAGATTTGGAAATTTGAAAAACTTGGAGAGCTTGGATCTTTATTCTAACAGTTTAACTGGTCCCATACCTGACACACTGGGCAAACTTACAAAACTAAGTACCTTGCGTCTGAACAACAATAGCTTATCAGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAACTTCTGGATCTTTCAAATAACCTTCTAACAGGAGACATTCCTGTCAATGGTTCGTTCTCTCTTTTCACACCAATCAGTTTTGCCAATAATCTTCTTCACATTTCTCCCTCTGCTCCTCCTCCGCCAACGAGAGATACACCACGAACATCTTCAGGTGATGGGGCTAATGGAGTCATTGTTGGAGCAATTGTTGCTGCTGCTGCTTTGCTGGTTGTTGTGCCTGCTACTGCACTTAATCTTTGGCGACGAAAAACTCAACAGGACCACTTCTTTGATGTAGCTGCTGAAGAAGATCCTGAAATTAACCTGGGCCAGCTCAAAAAATATTCTCTGCGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAAAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAGGAGCAGCCTGCTGAGGTTGGAGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTACTCCGTCTAAATGGATTTTGCATATCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGTTTAAGAGAGCGTAAGCAATGCCAGCCGCCACTCAACTGGGAAATACGTAAACGAGTTGCTATAGGGGCTGCACAGGGACTTGAATATTTACATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTACTAGATGATGAATTTGAGGCTGTTGTTGGAGATTTTGGATTGGCTAAACTCATGAACTACAAGGATACTCATGTCACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCAGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAATCTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGATGACATCATGTTGCTTGATTGGGTAAAAGGACTTCTGAATGATAAGAAACTGGAAACGTTGGTCGATCCCAATCTCGAAGGCAATTACGTAGAGGAAGAACTGGAGCAGGTAATTCAAGTTGCACTGCTTTGCACGCAAAGCTCCCCTGTGGAGCGACCAAAGATGTCGGAGGTGTTGCAAATGCTGGAAGGAGATGGTTTGGCTGAAAGATGGGAAGAATGGCAGAAAGAAGAGAGCTCACGCCGAAACTTCAATAATATGGTTCATTCTTCCAACCACCGGAATAGAACTCCCCAGTTTATTGATTCCACTTCTCATATTGCTCCTGATGTGTTGTCTGGTCCAAGATAG 2820 45.07 MSHSPTSCVGTQSPIVTTSVCLIVCSSFLVVAAILSFLDQPLYLRHAAGRRFGRRFHPPPEATICSLEKKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEASEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHLTELSCFAPDLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEVGASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEGGKQKARIFALKKEEAADTNAMVTAPYYQMICGEMRSNEMGRATLMFSAFSPFLRLILAMAFVLRVSANGEGDALNAFKLSLVDPNNVLQSWNTILMNPCTWFHVTCDEKESVIRVDLGNANLSGKLVPQLDQLTNLRYLELYSNNISGTIPERFGNLKNLESLDLYSNSLTGPIPDTLGKLTKLSTLRLNNNSLSGTIPMSLTTVPLQLLDLSNNLLTGDIPVNGSFSLFTPISFANNLLHISPSAPPPPTRDTPRTSSGDGANGVIVGAIVAAAALLVVVPATALNLWRRKTQQDHFFDVAAEEDPEINLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEQPAEVGELQFQTEVEMISMAVHRNLLRLNGFCISPTERLLVYPYMANGSLASCLRERKQCQPPLNWEIRKRVAIGAAQGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKSDVFGYGVMLLELVTGQKAFDLARLAKDDDIMLLDWVKGLLNDKKLETLVDPNLEGNYVEEELEQVIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEESSRRNFNNMVHSSNHRNRTPQFIDSTSHIAPDVLSGPR 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27124074 27150007 - CmPI595203_09g014890.1 Cmu09g1489 424718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1489 939 MobiDBLite consensus disorder prediction 215 244 - -
Cmu09g1489 939 Gene3D Transferase(Phosphotransferase) domain 1 688 905 - -
Cmu09g1489 939 Gene3D Phosphorylase Kinase; domain 1 580 687 - -
Cmu09g1489 939 FunFam Somatic embryogenesis receptor-like kinase 1 688 905 - -
Cmu09g1489 939 Gene3D Ribonuclease Inhibitor 349 528 IPR032675 -
Cmu09g1489 939 MobiDBLite consensus disorder prediction 230 244 - -
Cmu09g1489 939 Pfam Leucine rich repeat N-terminal domain 350 389 IPR013210 -
Cmu09g1489 939 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1489 939 SMART serkin_6 611 885 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1489 939 SUPERFAMILY Protein kinase-like (PK-like) 592 886 IPR011009 -
Cmu09g1489 939 SUPERFAMILY L domain-like 351 523 - -
Cmu09g1489 939 Pfam Retrotransposon gag protein 99 158 IPR005162 -
Cmu09g1489 939 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 334 910 - -
Cmu09g1489 939 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524(InterPro)
Cmu09g1489 939 MobiDBLite consensus disorder prediction 904 939 - -
Cmu09g1489 939 ProSiteProfiles Protein kinase domain profile. 611 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1489 939 FunFam Somatic embryogenesis receptor kinase 1 580 687 - -
Cmu09g1489 939 MobiDBLite consensus disorder prediction 907 929 - -
Cmu09g1489 939 Pfam Leucine rich repeat 416 476 IPR001611 GO:0005515(InterPro)
Cmu09g1489 939 Pfam Protein tyrosine and serine/threonine kinase 613 885 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1489 939 FunFam Somatic embryogenesis receptor kinase 1 348 533 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1350 Cmu-Chr1:26812343 Cmu09g1489 Cmu-Chr9:27124074 5.70E-72 dispersed
Cmu02g0832 Cmu-Chr2:9842856 Cmu09g1489 Cmu-Chr9:27124074 1.50E-34 dispersed
Cmu03g1520 Cmu-Chr3:12003947 Cmu09g1489 Cmu-Chr9:27124074 1.90E-07 dispersed
Cmu09g1489 Cmu-Chr9:27124074 Cmu10g1709 Cmu-Chr10:19803611 3.70E-210 dispersed
Cmu11g0921 Cmu-Chr11:12532098 Cmu09g1489 Cmu-Chr9:27124074 6.20E-50 dispersed
Cmu11g1075 Cmu-Chr11:19575389 Cmu09g1489 Cmu-Chr9:27124074 3.10E-19 dispersed
Cmu09g1489 Cmu-Chr9:27124074 Cmu07g1697 Cmu-Chr7:32242753 6.70E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75799 PF00069 Pkinase 1.00E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1489 K13416 - csv:101216386 1012.68