Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1524 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTGCGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATTCTAAGTTTCGTATTACTTCAGAGCCTCCAGACAGACCATCGAGTGGGTCGCTATTTCTTTTTGATCGCAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGAAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAGAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGCTGGAGCTGTCGTTGAGACTGACGAGGTTTCATCAAGTTCACAAAAGAGCAGTCCTAGGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTAACATCATTTTGTGAAGATGCTGATGCTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTTGCCAAAAATGGGAAATGGTCTTCTGGTGAATAAACAAGATGCTGATCAATCAAAATTTTATTTTCCGCATTCCTCTTCCAACAATCTTGACGCTTGGTCATCAGGTCCTTCTGTGGATTATGTAACACAAGTTCAGAAAGCTGGACTTGGGAGTAACGATGGTGATACTGGTGTGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAATTCCTAGCAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAAGAGCACGCTGACCAGTATCCAGATTTGTATTCTGTTTATGACATAGATAGCAGGTTTGAGCAGAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTCTGCTCATCCTGGCATAGAGAATGAGGATATTCTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATTGTATTCAGCTATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTGAAGAAAGTCGATAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGGGAAGTGGATGATTTGCACATGCATCCATCATCTGGCTTGTCCTGGACGACTGTAGAATGTGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAACTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACACTTGCAGATTTAGAAACTGAGGTTGTGATTATAGGGAAGTTTCTCGGGAACAATCATGGCACAAACTGTCATTGGTCATGTATGTTTGGGGAAGTCGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCGAGTCCCTTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCAGGCTCTGCGCAAGATGTAGATGTTACCGACATATATACTGTTGGTTCAACGAAAGAATTATGTATGCATTTGCGACTTGAGAGGTTACTCTCTCTTGGATCTTTAGATCCTTCAAATGACCTCTCTGAAGATGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCACAATAAAAGAAGAAGAAGATCTTTATGGGGAAGAGCCAAATTCCCAGAATGACCAAATTCAGCATCAAAACAAGGACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTAATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGACGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCTGGAGTGAGTATAAACTTTCGAGACATTAATGGATGGACTGCTGTTCATTGGGCAGCATCCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATGTCATTGGATGCTGATCCTGGATTGCCTTCAGATCCTTCTCCAGAATTTCCATGGGGCAGAACACCGGCAGATCTTGCGTCTGATAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAAATCTGTATCAATGGCTGATTCCATATCAATGGGTGAGGCTGTAGAAGATGGTGTGGCAGACGTTTCAAAGAGGAAACCAGTGCATACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTAAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAATGTGGAACTGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCATTTGTCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCAGTCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTACTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTTTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGAGCAGATGCAGTTGCCAAGGATCCACCCTCCGTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCACAGTATCCCGAGGGACGAGACCAATACCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTCATATGGCTGTTACTAGTACTTCGGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACACACTGCTGGACGACGATGCTTTGATGTCTATGACATTTGATTGA 3306 42.8 MADRGSYGLAPRLDIEQLLIEAKHRWLRPAEICEILRNYSKFRITSEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNAGAVVETDEVSSSSQKSSPRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADAEDTYQATSRFHSFPTLPKMGNGLLVNKQDADQSKFYFPHSSSNNLDAWSSGPSVDYVTQVQKAGLGSNDGDTGVMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPSKLLTSNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKEHADQYPDLYSVYDIDSRFEQKSHDATFGSGHEMFSAHPGIENEDILPNLELQFKEGELYSAMRLSSENDMSKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTLADLETEVVIIGKFLGNNHGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYTVGSTKELCMHLRLERLLSLGSLDPSNDLSEDALEKRNLIRELITIKEEEDLYGEEPNSQNDQIQHQNKDKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGDGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTAVHWAASCGRELTVGTLMSLDADPGLPSDPSPEFPWGRTPADLASDNGHKGISGFLAEAALTSYVKSVSMADSISMGEAVEDGVADVSKRKPVHTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECGTDEFGSSDDSALSFVKARARKSGLSNSPVHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRADAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSHMAVTSTSEEIIEGDDMIDIDTLLDDDALMSMTFD 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28489002 28506406 + CmPI595203_09g015240.1 Cmu09g1524 424753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1524 1101 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1065 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cmu09g1524 1101 ProSiteProfiles IQ motif profile. 925 953 - -
Cmu09g1524 1101 Gene3D Immunoglobulins 500 595 IPR013783 -
Cmu09g1524 1101 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cmu09g1524 1101 MobiDBLite consensus disorder prediction 146 188 - -
Cmu09g1524 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 974 IPR027417 -
Cmu09g1524 1101 Pfam IPT/TIG domain 506 579 IPR002909 -
Cmu09g1524 1101 Pfam Ankyrin repeats (3 copies) 714 803 IPR002110 GO:0005515(InterPro)
Cmu09g1524 1101 Gene3D - 924 971 - -
Cmu09g1524 1101 ProSiteProfiles IQ motif profile. 947 971 - -
Cmu09g1524 1101 Gene3D - 665 865 IPR036770 -
Cmu09g1524 1101 SUPERFAMILY Ankyrin repeat 687 803 IPR036770 -
Cmu09g1524 1101 SUPERFAMILY E set domains 507 591 IPR014756 -
Cmu09g1524 1101 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cmu09g1524 1101 Pfam IQ calmodulin-binding motif 925 944 IPR000048 GO:0005515(InterPro)
Cmu09g1524 1101 Pfam IQ calmodulin-binding motif 949 968 IPR000048 GO:0005515(InterPro)
Cmu09g1524 1101 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cmu09g1524 1101 FunFam Calmodulin-binding transcription activator 2 500 595 - -
Cmu09g1524 1101 SMART iq_5 946 968 IPR000048 GO:0005515(InterPro)
Cmu09g1524 1101 SMART iq_5 923 945 IPR000048 GO:0005515(InterPro)
Cmu09g1524 1101 FunFam Calmodulin-binding transcription activator 2 923 971 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1524 K21596 - - csv:101203707 1924.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0785 Cmu-Chr4:22411792 Cmu09g1524 Cmu-Chr9:28489002 7.90E-160 dispersed
Cmu06g0212 Cmu-Chr6:2300076 Cmu09g1524 Cmu-Chr9:28489002 7.00E-111 dispersed
Cmu09g1524 Cmu-Chr9:28489002 Cmu10g1690 Cmu-Chr10:19316348 9.30E-144 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g1690 . 46 673 CAMTA Transcription Factor Family AT2G22300 53.2 2.9e-173 606.3
Cmu09g1524 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.0e-277 953.4
Cmu10g1691 . 76 212 CAMTA Transcription Factor Family AT5G64220 72.5 1.4e-53 208.8
Cmu06g0212 . 6 939 CAMTA Transcription Factor Family AT1G67310 52.0 5.6e-252 867.8
Cmu06g0452 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
Cmu06g0452 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.6 2.6e-192 669.5
Cmu09g1524 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.0e-277 953.4
Cmu10g1691 . 76 212 CAMTA Transcription Factor Family AT5G64220 72.5 1.4e-53 208.8
Cmu10g1690 . 46 673 CAMTA Transcription Factor Family AT2G22300 53.2 2.9e-173 606.3
Cmu06g0212 . 6 939 CAMTA Transcription Factor Family AT1G67310 52.0 5.6e-252 867.8
Cmu06g0452 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.6 2.6e-192 669.5
Cmu06g0452 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6868 PF03859 CG-1 5.40E-51 No_clan Cmu TF