Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1558 ATGCCGTCAAAGGGAAAGAAGAACCCAAAGACACTCTCTAGATTGTCAAACTCCAGCCACTCTCCATCTCCAGTGCCACGATTGACAATACCTCCTGCCTCCGAAGTTTGTGAAGATGAGTTTCTTTCCTCTATTGACGAAGCTTCAAGTAAATATCCTTCTTTGATTGGTAAATCTGCTTTTGTTGGGAGAGTTACTAGTGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACTCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGAGGGAGGTAACAATTTAAAAGGCTTTCCTCTGTCCTCGTTAGCAGATGAATGCGGTAGGCACTTTGGGGTTGATCCTGGAGATTCAATAATCCATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAACCTCTCGTTTACCTTGGGTTGCCCTGAAAGTGGTCGTGTGGTGTTTATCTTCCCTATAAAAGCCCACCTATGCAATGATCCATTAAATGATAATGTGGAATTGAAGAGCACAGAAGTTGAATCTCTGAGAATAATCAATTGTAAGGAACTATTCCTGGATCTATCTTGTTCATCCAATATATCAACAAAAGACAACCTATTCTCTTCTTCAACTATTTATTCAAGAAAGGTTCATGGTTATAGTGAAAATGGTAATTTAACATCCCCAAGCACCATGTTGTCTGTATCTCCTAAATGTGATGACGTGGTATCAAATTTACTTGTAGACAGTCCATGTGCTCGTTCACTTATTAAGGAGGCCTTAGAAGATGATAGTGTTAGAAAAACTCTACAGACGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCGTGTGAGAGGTGGTAAAGGACTGTTGGGATATGATGACTCTTATAATTCTATGCACAGTGGAAGTGACGATCATTTTCAACATTTTTCATCAAATGAATATGTGGACTATGCTTTCAATATAGACCAGCTGACAAAAGTATTTATAAATGTTCAATCAACCATGGTCTCAGAGACAGTGCAAGAAAGAGTTCCATCAAATGTGGAACCTCAAAATCTAAATATTAGAGCTAAAGTAAAGCCTAAAGTTTGGAAATTGGGTGGTCTTTCAAAAGAATATGCAGTTTTGAAGGATATTATAATTGCTTCATCATTAAATAGCACTGTGTCCAGCCTCGGGTTACGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGACGTTTTTGAGATGGCAAGCCAAGCTGCACCTGCCGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAGGATGGAGGTGAAGAGCTGTCGCAAAGAATTGTTGCTACATTGCTCAATCTAATGGATGGGATCAATCGAAGTGGTGGGCCGCTTGTAATTGCTTCTACCAACAGACCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGATCGGGAAATTGAAATAGGTGTGCCATCTCCTAACCAGCGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTTGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTAGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCATGAGTTTAGAGTTTCTTCTGATTGCCTTAGTTCTGGTAGATCTGTTGTAGCAGAGGAACAACACAAGTTTACTGAGGTGGATCACAAAGCCAATGTCGATCATATGATTTTGGAACCTGTTCTCTCGCAAGACGCAAGAAGTAAATCAGGCGTTTGCCCAAACCTTGCATCTTCATCAATCTCTGAGCATACTTTTACATCTGACCCGCTAACATGTGTGTCCTCAAATGAAGTGGTTGCTGATAGTGAGGATATTCTAAACTCTTCCGAAATCAAGGGTAGATTGAAGGTTGTTTTTGAAGACTTTGAGGTGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAATTGGAGGTTAAGGCTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTGATGGCACGTGCGGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGGGCTAATGCCCCATCAATTGTATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTGTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAAATGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCTAGCCCTCCTAAGGCCAGGACGTTTTGATCGATTGCTTTATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACTAGGAAGTTGGCGTCTCTTACTCAAGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAATCAGCTTTATTTGCCCTCGAGGAGAACCTTGAGGCTTCAAGAATAAATATGAAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTACCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTCGTCTGTCAGCAGTCGCGATCTAACTGGTTTTCTTTTTGGCCCCTTGTAAAATCTGCTGTGTTAGTTTTCTATCGGGTTCGTCACATGCTTGAAGACTTCAAATGA 3177 41.67 MPSKGKKNPKTLSRLSNSSHSPSPVPRLTIPPASEVCEDEFLSSIDEASSKYPSLIGKSAFVGRVTSAPVQSTGCKVWLSESSMVASSFTQGAIVSVALSSEGGNNLKGFPLSSLADECGRHFGVDPGDSIIHEAGNYFALARIFSSSKELNDGVQLSTNLSFTLGCPESGRVVFIFPIKAHLCNDPLNDNVELKSTEVESLRIINCKELFLDLSCSSNISTKDNLFSSSTIYSRKVHGYSENGNLTSPSTMLSVSPKCDDVVSNLLVDSPCARSLIKEALEDDSVRKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFRVRGGKGLLGYDDSYNSMHSGSDDHFQHFSSNEYVDYAFNIDQLTKVFINVQSTMVSETVQERVPSNVEPQNLNIRAKVKPKVWKLGGLSKEYAVLKDIIIASSLNSTVSSLGLRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEMASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHEFRVSSDCLSSGRSVVAEEQHKFTEVDHKANVDHMILEPVLSQDARSKSGVCPNLASSSISEHTFTSDPLTCVSSNEVVADSEDILNSSEIKGRLKVVFEDFEVARMKVRPSAMREVILEVPKVKWEDIGGQLEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVEMDGLHQRVGVTVIAATNRPDKIDLALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICRESALFALEENLEASRINMKHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWPLVKSAVLVFYRVRHMLEDFK 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29262660 29276016 - CmPI595203_09g015580.1 Cmu09g1558 424787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1558 1058 PANTHER AAA-FAMILY ATPASE 75 1012 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Cmu09g1558 1058 CDD RecA-like_CDC48_NLV2_r1-like 405 568 - -
Cmu09g1558 1058 FunFam spermatogenesis-associated protein 5-like protein 1 924 1007 - -
Cmu09g1558 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 998 IPR027417 -
Cmu09g1558 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 625 IPR027417 -
Cmu09g1558 1058 Gene3D - 387 569 IPR027417 -
Cmu09g1558 1058 MobiDBLite consensus disorder prediction 9 24 - -
Cmu09g1558 1058 Gene3D - 570 694 - -
Cmu09g1558 1058 Pfam ATPase family associated with various cellular activities (AAA) 791 922 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1558 1058 Pfam ATPase family associated with various cellular activities (AAA) 440 569 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1558 1058 ProSiteProfiles Plant heme peroxidase family profile. 440 768 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu09g1558 1058 Gene3D - 748 995 IPR027417 -
Cmu09g1558 1058 ProSitePatterns AAA-protein family signature. 893 911 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1558 1058 Gene3D - 924 994 - -
Cmu09g1558 1058 FunFam calmodulin-interacting protein 111 isoform X1 748 923 - -
Cmu09g1558 1058 SMART AAA_5 436 572 IPR003593 GO:0016887(InterPro)
Cmu09g1558 1058 SMART AAA_5 787 925 IPR003593 GO:0016887(InterPro)
Cmu09g1558 1058 Coils Coil 972 992 - -
Cmu09g1558 1058 CDD RecA-like_CDC48_r2-like 762 921 - -
Cmu09g1558 1058 MobiDBLite consensus disorder prediction 1 30 - -
Cmu09g1558 1058 FunFam Putative vesicular transport protein (CDC48) 391 569 - -
Cmu09g1558 1058 Pfam AAA+ lid domain 945 990 IPR041569 -
Cmu09g1558 1058 Pfam AAA+ lid domain 594 634 IPR041569 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1558 Cmu-Chr9:29262660 Cmu10g2740 Cmu-Chr10:34066626 3.40E-119 dispersed
Cmu09g1558 Cmu-Chr9:29262660 Cmu04g0958 Cmu-Chr4:24038674 5.30E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1558 - - - 0.0