Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1583 ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGACGACATTAACGGCGGGGAAGAGTCCATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTTCTACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACCCATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGCGAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGATGATAAATAG 924 47.94 MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPSTYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNDDK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30098009 30103774 + CmPI595203_09g015830.1 Cmu09g1583 424812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1583 307 MobiDBLite consensus disorder prediction 267 307 - -
Cmu09g1583 307 MobiDBLite consensus disorder prediction 1 58 - -
Cmu09g1583 307 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g1583 307 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g1583 307 PANTHER GATA TRANSCRIPTION FACTOR 28 38 302 IPR045280 GO:0006355(InterPro)
Cmu09g1583 307 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu09g1583 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cmu09g1583 307 MobiDBLite consensus disorder prediction 1 24 - -
Cmu09g1583 307 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cmu09g1583 307 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Cmu09g1583 307 CDD ZnF_GATA 224 274 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g1583 307 SMART tify_2 86 121 IPR010399 -
Cmu09g1583 307 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Cmu09g1583 307 Pfam tify domain 90 120 IPR010399 -
Cmu09g1583 307 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g1583 307 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1583 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1098 Cmu-Chr8:23328077 Cmu09g1583 Cmu-Chr9:30098009 7.70E-59 dispersed
Cmu09g0157 Cmu-Chr9:1719868 Cmu09g1583 Cmu-Chr9:30098009 7.20E-57 dispersed
Cmu09g1583 Cmu-Chr9:30098009 Cmu04g0906 Cmu-Chr4:23557105 3.30E-06 dispersed
Cmu09g1583 Cmu-Chr9:30098009 Cmu09g0516 Cmu-Chr9:4768922 7.30E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g0157 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cmu08g1098 . 204 397 Tify Gene Family AT4G24470 61.8 1.6e-59 226.9
Cmu09g1583 . 89 267 Tify Gene Family AT4G24470 59.7 3.6e-48 189.1
Cmu09g0157 . 1 288 Tify Gene Family AT1G51600 59.1 1.1e-86 317.0
Cmu09g1583 . 86 303 Tify Gene Family AT1G51600 54.4 6.7e-52 201.4
Cmu08g1097 . 155 358 Tify Gene Family AT1G51600 51.2 2.5e-46 183.0
Cmu08g1098 . 198 397 Tify Gene Family AT1G51600 52.3 8.7e-44 174.5
Cmu08g1098 . 204 397 Tify Gene Family AT4G24470 61.8 1.6e-59 226.9
Cmu09g1583 . 89 267 Tify Gene Family AT4G24470 59.7 3.6e-48 189.1
Cmu09g0157 . 1 288 Tify Gene Family AT1G51600 59.1 1.1e-86 317.0
Cmu09g1583 . 86 303 Tify Gene Family AT1G51600 54.4 6.7e-52 201.4
Cmu08g1097 . 155 358 Tify Gene Family AT1G51600 51.2 2.5e-46 183.0
Cmu08g1098 . 198 397 Tify Gene Family AT1G51600 52.3 8.7e-44 174.5
Cmu09g0157 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cmu06g0631 . 1 180 Tify Gene Family AT4G14713 53.1 1.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6871 PF06203 CCT 1.60E-15 CL0281 Cmu TF