Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1623 ATGGCTGCCCCAATCCCCATTTTCATTTTTCTTCTTCCTCTGGTATTCTTCATCAACATCTTGTCATTCTTCTCTGCACTTACACTTTCAAGTTCTTTATCTTTCAACTTCACCTCTTTCGATTCAAGTAATACCCACATCTTCTACGAGAGAGCATTCCCATCAAATCGAACAATCAAACTCACAGGAGAAAGGGTTAATAGTAACCAAAATTTCTCTGGACGAGCAACTTACTTCAAGCCCTTGCATCTTTGGGACAAAGCCTCTGGGAATCTTTCAAGTTTCCGAACTCATTTCTCCTTCGCCATTGATTCAGAAGGAGCAGAAAGGTACGGAGATGGGCTTACATTCTTCTTTGCTCCTAATAATTCTAGGCTTGATGATGAGATCTCAAAGGGCAGTGGATTGGGGATTGGGTTTAACCCCAGTTTGACAAATTTAACATATAGTTCCTTTTTTGCAGTTGAGTTTGATATCTTTAGCAATTACTTTGATCCACCTGAAAAACTAGAACATGTAGGTATTGATATCAATTCAATGGCTTCTGTTGCTTATTCAGTATGGAAATGTGATATTAGGAGAGGGAAGAGAACTGATGTTTGGATTAATTATGATTCTGTTACTTTGAATTTGAGTGTTACTTTCACTGGAGGTTTCTTAAGGGACTTAAATTGCTATGTCGCTGTGAAGAAAGTATCAAAAGGGTCTAGACAAGGACTAAAAGAGTATGCATCTGAGGTGAAAATCATTAGCCAATTGAGACATAGAAACTTAGTGCAACTCTTGGGTTGGTGTCATGAAAGAGGTGAGCTTTTGCTGGTTTATGAATTCATGTCAAATGGAAGCTTAGATGCCCATCTTTTCAAAGAAAACAACTTCTTAACATGGGAATTTCGATACAAAGTTGCTCGAGGTATTGCCTCGGCTCTGCTATATCTACATGAAGAGTGGGAAAAATGTGTGCTGCATCGAGATATAAAGTCGAGCAATGTAATGTTGGATTCAGATTTCAATGCAAAGCTTGGAGATTTTGGGTTGGCTAGGCTAGTAGACCATGCCATAGGTTCACAAACAACAGTTCTTGCTGGAACAATGGGCTACTTGGCTCCTGAATGTGCTACAACAGGAAGAGCCAGTAAGGAATCAGATGTATTCAGCTTTGGGATTGTGGCTTTGGAAATTGCTTGTGGAAGAAGACCCTTTAATCCCAATGTAGAGGAAGACAAAATGGTGATGGTAGAGTGGGTTTGGAAACTTTATGGCCATGGAAGACTTCTTGAAGCAGCCGACTCGAAACTCCATGGAAGCTTGGAGGATGAACCGCAGCAGCAACAACAGATTGAGTGTTTGATGGTTGTTGATCACAGGTCATCGAAAATTCGTAAGGTTTATGTGAAAGCTCTAGCCTAG 1410 40.21 MAAPIPIFIFLLPLVFFINILSFFSALTLSSSLSFNFTSFDSSNTHIFYERAFPSNRTIKLTGERVNSNQNFSGRATYFKPLHLWDKASGNLSSFRTHFSFAIDSEGAERYGDGLTFFFAPNNSRLDDEISKGSGLGIGFNPSLTNLTYSSFFAVEFDIFSNYFDPPEKLEHVGIDINSMASVAYSVWKCDIRRGKRTDVWINYDSVTLNLSVTFTGGFLRDLNCYVAVKKVSKGSRQGLKEYASEVKIISQLRHRNLVQLLGWCHERGELLLVYEFMSNGSLDAHLFKENNFLTWEFRYKVARGIASALLYLHEEWEKCVLHRDIKSSNVMLDSDFNAKLGDFGLARLVDHAIGSQTTVLAGTMGYLAPECATTGRASKESDVFSFGIVALEIACGRRPFNPNVEEDKMVMVEWVWKLYGHGRLLEAADSKLHGSLEDEPQQQQQIECLMVVDHRSSKIRKVYVKALA 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30966911 30970009 + CmPI595203_09g016230.1 Cmu09g1623 424852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1623 469 CDD lectin_legume_LecRK_Arcelin_ConA 35 216 IPR001220 GO:0030246(InterPro)
Cmu09g1623 469 ProSiteProfiles Protein kinase domain profile. 186 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1623 469 Gene3D Transferase(Phosphotransferase) domain 1 279 462 - -
Cmu09g1623 469 Gene3D - 30 215 - -
Cmu09g1623 469 Pfam Protein kinase domain 221 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1623 469 FunFam Lectin-domain containing receptor kinase A4.3 278 467 - -
Cmu09g1623 469 Pfam Legume lectin domain 32 216 IPR001220 GO:0030246(InterPro)
Cmu09g1623 469 SUPERFAMILY Protein kinase-like (PK-like) 223 443 IPR011009 -
Cmu09g1623 469 PANTHER - 59 215 IPR050528 GO:0005886(PANTHER)
Cmu09g1623 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1623 469 SMART serkin_6 214 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1623 469 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 217 IPR013320 -
Cmu09g1623 469 Gene3D Phosphorylase Kinase; domain 1 216 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1104 Cmu-Chr9:11278056 Cmu09g1623 Cmu-Chr9:30966911 3.00E-18 dispersed
Cmu09g1623 Cmu-Chr9:30966911 Cmu09g1652 Cmu-Chr9:31848728 5.80E-103 dispersed
Cmu09g1622 Cmu-Chr9:30940447 Cmu09g1623 Cmu-Chr9:30966911 8.50E-66 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75803 PF00069 Pkinase 3.60E-42 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1623 - - - 0.0