Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g1701 | ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCCATGAATTCCGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGTGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAACTGATCAGAAATTAA | 1239 | 41.57 | MTDFSAFRTGGFKRKMPRPHFHKLVLTSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMNPPPLRSVSHIKLIRN | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 32940584 | 32943575 | + | CmPI595203_09g017010.1 | Cmu09g1701 | 424930 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g1701 | 412 | SUPERFAMILY | DNA-binding pseudobarrel domain | 281 | 380 | IPR015300 | - | |
Cmu09g1701 | 412 | CDD | B3_DNA | 19 | 111 | IPR003340 | GO:0003677(InterPro) | |
Cmu09g1701 | 412 | SUPERFAMILY | DNA-binding pseudobarrel domain | 17 | 113 | IPR015300 | - | |
Cmu09g1701 | 412 | Gene3D | - | 263 | 383 | IPR015300 | - | |
Cmu09g1701 | 412 | ProSiteProfiles | B3 DNA-binding domain profile. | 286 | 381 | IPR003340 | GO:0003677(InterPro) | |
Cmu09g1701 | 412 | CDD | B3_DNA | 284 | 379 | IPR003340 | GO:0003677(InterPro) | |
Cmu09g1701 | 412 | Pfam | B3 DNA binding domain | 21 | 111 | IPR003340 | GO:0003677(InterPro) | |
Cmu09g1701 | 412 | Pfam | B3 DNA binding domain | 288 | 379 | IPR003340 | GO:0003677(InterPro) | |
Cmu09g1701 | 412 | PANTHER | B3 DOMAIN-CONTAINING | 17 | 366 | IPR050655 | - | |
Cmu09g1701 | 412 | ProSiteProfiles | B3 DNA-binding domain profile. | 20 | 113 | IPR003340 | GO:0003677(InterPro) | |
Cmu09g1701 | 412 | SMART | B3_2 | 286 | 381 | IPR003340 | GO:0003677(InterPro) | |
Cmu09g1701 | 412 | SMART | B3_2 | 21 | 113 | IPR003340 | GO:0003677(InterPro) | |
Cmu09g1701 | 412 | Gene3D | - | 13 | 114 | IPR015300 | - | |
Cmu09g1701 | 412 | MobiDBLite | consensus disorder prediction | 219 | 244 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g1309 | Cmu-Chr2:26377532 | Cmu09g1701 | Cmu-Chr9:32940584 | 1.50E-23 | dispersed | |
Cmu02g1310 | Cmu-Chr2:26388537 | Cmu09g1701 | Cmu-Chr9:32940584 | 9.00E-28 | dispersed | |
Cmu09g1701 | Cmu-Chr9:32940584 | Cmu09g1702 | Cmu-Chr9:32959115 | 7.40E-46 | tandem | |
Cmu07g1690 | Cmu-Chr7:32201450 | Cmu09g1701 | Cmu-Chr9:32940584 | 5.60E-29 | transposed | |
Cmu01g1598 | Cmu-Chr1:29681333 | Cmu09g1701 | Cmu-Chr9:32940584 | 6.50E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6876 | PF02362 | B3 | 5.70E-18 | CL0405 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g1701 | - | - | - | 0.0 |