Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1701 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCCATGAATTCCGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGTGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAACTGATCAGAAATTAA 1239 41.57 MTDFSAFRTGGFKRKMPRPHFHKLVLTSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMNPPPLRSVSHIKLIRN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32940584 32943575 + CmPI595203_09g017010.1 Cmu09g1701 424930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1701 412 SUPERFAMILY DNA-binding pseudobarrel domain 281 380 IPR015300 -
Cmu09g1701 412 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Cmu09g1701 412 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Cmu09g1701 412 Gene3D - 263 383 IPR015300 -
Cmu09g1701 412 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677(InterPro)
Cmu09g1701 412 CDD B3_DNA 284 379 IPR003340 GO:0003677(InterPro)
Cmu09g1701 412 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677(InterPro)
Cmu09g1701 412 Pfam B3 DNA binding domain 288 379 IPR003340 GO:0003677(InterPro)
Cmu09g1701 412 PANTHER B3 DOMAIN-CONTAINING 17 366 IPR050655 -
Cmu09g1701 412 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Cmu09g1701 412 SMART B3_2 286 381 IPR003340 GO:0003677(InterPro)
Cmu09g1701 412 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Cmu09g1701 412 Gene3D - 13 114 IPR015300 -
Cmu09g1701 412 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1309 Cmu-Chr2:26377532 Cmu09g1701 Cmu-Chr9:32940584 1.50E-23 dispersed
Cmu02g1310 Cmu-Chr2:26388537 Cmu09g1701 Cmu-Chr9:32940584 9.00E-28 dispersed
Cmu09g1701 Cmu-Chr9:32940584 Cmu09g1702 Cmu-Chr9:32959115 7.40E-46 tandem
Cmu07g1690 Cmu-Chr7:32201450 Cmu09g1701 Cmu-Chr9:32940584 5.60E-29 transposed
Cmu01g1598 Cmu-Chr1:29681333 Cmu09g1701 Cmu-Chr9:32940584 6.50E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6876 PF02362 B3 5.70E-18 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1701 - - - 0.0