Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1710 ATGCCGACCGCCCCTTCTCCTTCTCCTTCTCCTTCTCCTACCCCTTCCTCCTCCTCCTCCACCGCCGTCAATTTCCCTCCCCCCGCCTCCTTGCAGTCGGCAAAGCTCCCCGTCGATTTCAGCCCCCCTCTAATCGCCATGGTTGTCGTCATCGCTACCGCCTTCCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCATCTCATCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGCCGTCGCTGGCGCCGGTGGCGGCGCCGACGTCGACGCGCCCGATCTTACCTTCCGTCTTCCTCTGGAGGCGACCTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACAGATGGCTTCCACGTTTTCTCTCCATACGGTCTCGACGAATCCGTAATCAAGACGATTCCGCTTTCCGTTTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTCGAGTTTGAAGACGATGATTACGTCAGAACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCTCTTTGTCGCGCGGTGGTTTTCAGGCCGGAATCTCCATTTACACCGGTTATGGCGGCTAGAATCCGGCCAAGCCTCGATGATACGATCTTACGGAGTATCGTATTAGAGCCGCTCGTGGAAGGTCCTATTCCTAATCTAGATTCTTATCACGCGACGGAATCGGAAATTACTCCTTGCGTTGATGAACCACGGAATAGCAATTCCGTGGAGGATCAAATGAACGGACAAGATTTCTTGCTGAAGCGATCGTATTCATTTGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTCTGGAACCAGCGACCACGTCTCCTTGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGTCCGTCGCCGTTCGGATCTCTACCGAAGGCAAGAGTGTTTTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGACGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGTGTAGGCGGAGGCTCATCGAGACGGAGTAAGTCAATGACGAGTCCGATGTTTCTCCGATCGTCGGTAACCGGCGGAGGAACAGCGGCGTTCTCGTCGAGCCGGTTGAGATGCGGAGATCCGGAGGCGTTATTATCACCGGAGAGATTCAACCAAAGATGA 1218 54.11 MPTAPSPSPSPSPTPSSSSSTAVNFPPPASLQSAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLVEGPIPNLDSYHATESEITPCVDEPRNSNSVEDQMNGQDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGTAAFSSSRLRCGDPEALLSPERFNQR 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33084245 33085462 - CmPI595203_09g017100.1 Cmu09g1710 424939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1710 405 SMART ring_2 151 192 IPR001841 -
Cmu09g1710 405 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Cmu09g1710 405 Pfam Ring finger domain 150 193 IPR001841 -
Cmu09g1710 405 SUPERFAMILY RING/U-box 147 199 - -
Cmu09g1710 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Cmu09g1710 405 PANTHER RING-H2 FINGER PROTEIN ATL16 16 216 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cmu09g1710 405 FunFam RING-H2 finger protein ATL65 122 197 - -
Cmu09g1710 405 MobiDBLite consensus disorder prediction 352 377 - -
Cmu09g1710 405 CDD RING-H2_EL5-like 150 193 - -
Cmu09g1710 405 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1710 Cmu-Chr9:33084245 Cmu09g1809 Cmu-Chr9:34254499 1.40E-17 dispersed
Cmu02g1941 Cmu-Chr2:33277633 Cmu09g1710 Cmu-Chr9:33084245 2.80E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1710 - - - 0.0