Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1739 ATGGCTTCAATGGAGTTCCTAATCCTCCAATTGGGTCTTCTTTTTATGGTCTCATCTGTTAATGCCAATTATGGAGGTTGGATCAACGCTCATGCCACTTTCTATGGTGGAAGCGATGCATCTGGGACAATGGGAGGGGCTTGTGGGTATGGTAATTTGTATAGCCAAGGCTATGGAACTAACACTGCGGCGCTGAGCACAGCGTTGTTTGATAATGGACTCAGCTGTGGCGCTTGCTTTGAGCTACGGTGTGTGAACGACCCCCAATGGTGTCTTCCAGGCACCATCGTTGTCACTGCCACTAATTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCATCATTTTGACCTCTCTCAGCCTATCTTCCAACACATTGCCCAATATCGCGCCGGAATTGTCCCCGTCGCTTATCGCAGAGTAAGGTGCAGGAGAAGTGGGGGAATAAGATTCACAATCAATGGGCATTCATATTTCAATTTGGTGTTGGTGACTAACGTGGGGGGCGCCGGAGATGTACATGCCATGGCGATTAAGGGTTCGAAAACCAGATGGCAACCGATGTCTAGAAATTGGGGGCAAAATTGGCAATCCAACTCTTATCTGAACGGACAGAGTCTATCGTTTTTGGTCACAGCCAGCGACGGACGGCGAGTGCTCTCCTACAACGTGGCTCCCTCCGGCTGGTCCTTTGGACAGACTTATGTCGGCGGACAATTTCGTTATTAA 732 50.27 MASMEFLILQLGLLFMVSSVNANYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDVHAMAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRRVLSYNVAPSGWSFGQTYVGGQFRY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33422439 33423326 + CmPI595203_09g017390.1 Cmu09g1739 424968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1739 243 Gene3D - 15 145 IPR036908 -
Cmu09g1739 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Cmu09g1739 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Cmu09g1739 243 FunFam Expansin 149 241 - -
Cmu09g1739 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cmu09g1739 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
Cmu09g1739 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Cmu09g1739 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Cmu09g1739 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Cmu09g1739 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Cmu09g1739 243 PANTHER EXPANSIN-A15 14 241 IPR002963 GO:0009664(InterPro)
Cmu09g1739 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Cmu09g1739 243 SMART dpbb_1 62 139 IPR007112 -
Cmu09g1739 243 CDD DPBB_EXPA_N 26 144 - -
Cmu09g1739 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Cmu09g1739 243 Gene3D - 149 241 IPR036749 -
Cmu09g1739 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Cmu09g1739 243 FunFam Expansin 16 145 - -
Cmu09g1739 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1739 Cmu-Chr9:33422439 Cmu11g0982 Cmu-Chr11:15107540 2.10E-104 dispersed
Cmu04g1254 Cmu-Chr4:26999717 Cmu09g1739 Cmu-Chr9:33422439 1.90E-94 wgd
Cmu05g2469 Cmu-Chr5:33667992 Cmu09g1739 Cmu-Chr9:33422439 3.10E-110 wgd
Cmu06g1663 Cmu-Chr6:27751933 Cmu09g1739 Cmu-Chr9:33422439 6.00E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1739 K20628 - csv:101220358 473.396