Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1750 ATGGATTTAGCCGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAATGGTGTTCTCAAGCGCCACCATCACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCTTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 906 51.32 MDLAAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33520914 33521819 + CmPI595203_09g017500.1 Cmu09g1750 424979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1750 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 257 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu09g1750 301 MobiDBLite consensus disorder prediction 137 151 - -
Cmu09g1750 301 FunFam Zinc-finger homeodomain protein 2 186 260 - -
Cmu09g1750 301 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Cmu09g1750 301 MobiDBLite consensus disorder prediction 1 39 - -
Cmu09g1750 301 Gene3D - 186 260 - -
Cmu09g1750 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Cmu09g1750 301 MobiDBLite consensus disorder prediction 7 39 - -
Cmu09g1750 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Cmu09g1750 301 MobiDBLite consensus disorder prediction 131 160 - -
Cmu09g1750 301 SUPERFAMILY Homeodomain-like 187 260 IPR009057 -
Cmu09g1750 301 NCBIfam homeobox domain, ZF-HD class 199 256 IPR006455 -
Cmu09g1750 301 MobiDBLite consensus disorder prediction 275 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1750 Cmu-Chr9:33520914 Cmu10g1661 Cmu-Chr10:18561392 3.90E-36 dispersed
Cmu09g1750 Cmu-Chr9:33520914 Cmu09g1751 Cmu-Chr9:33533069 7.90E-13 tandem
Cmu10g2256 Cmu-Chr10:28737137 Cmu09g1750 Cmu-Chr9:33520914 1.80E-81 wgd
Cmu04g1264 Cmu-Chr4:27077320 Cmu09g1750 Cmu-Chr9:33520914 1.30E-12 wgd
Cmu05g2486 Cmu-Chr5:33738344 Cmu09g1750 Cmu-Chr9:33520914 1.20E-42 wgd
Cmu06g1674 Cmu-Chr6:27811526 Cmu09g1750 Cmu-Chr9:33520914 6.40E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6881 PF04770 ZF-HD_dimer 9.90E-29 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1750 - - - 0.0