Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1750 ATGGATTTAGCCGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAATGGTGTTCTCAAGCGCCACCATCACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCTTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 906 51.32 MDLAAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33520914 33521819 + CmPI595203_09g017500.1 Cmu09g1750 424979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1750 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 257 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu09g1750 301 MobiDBLite consensus disorder prediction 137 151 - -
Cmu09g1750 301 FunFam Zinc-finger homeodomain protein 2 186 260 - -
Cmu09g1750 301 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Cmu09g1750 301 MobiDBLite consensus disorder prediction 1 39 - -
Cmu09g1750 301 Gene3D - 186 260 - -
Cmu09g1750 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Cmu09g1750 301 MobiDBLite consensus disorder prediction 7 39 - -
Cmu09g1750 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Cmu09g1750 301 MobiDBLite consensus disorder prediction 131 160 - -
Cmu09g1750 301 SUPERFAMILY Homeodomain-like 187 260 IPR009057 -
Cmu09g1750 301 NCBIfam homeobox domain, ZF-HD class 199 256 IPR006455 -
Cmu09g1750 301 MobiDBLite consensus disorder prediction 275 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1750 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1750 Cmu-Chr9:33520914 Cmu10g1661 Cmu-Chr10:18561392 3.90E-36 dispersed
Cmu09g1750 Cmu-Chr9:33520914 Cmu09g1751 Cmu-Chr9:33533069 7.90E-13 tandem
Cmu10g2256 Cmu-Chr10:28737137 Cmu09g1750 Cmu-Chr9:33520914 1.80E-81 wgd
Cmu04g1264 Cmu-Chr4:27077320 Cmu09g1750 Cmu-Chr9:33520914 1.30E-12 wgd
Cmu05g2486 Cmu-Chr5:33738344 Cmu09g1750 Cmu-Chr9:33520914 1.20E-42 wgd
Cmu06g1674 Cmu-Chr6:27811526 Cmu09g1750 Cmu-Chr9:33520914 6.40E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1086 . 55 246 ZF-HD Transcription Factor Family AT5G65410 50.7 1.2e-44 177.2
Cmu08g1086 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 2.4e-49 192.6
Cmu01g1793 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Cmu10g1661 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 4.1e-41 165.2
Cmu11g0008 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Cmu11g0008 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.2 5.1e-55 211.8
Cmu01g1894 . 128 334 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cmu10g2256 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.9e-51 198.7
Cmu09g1750 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.1e-51 198.4
Cmu10g2256 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cmu09g1750 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.9e-58 222.6
Cmu09g1750 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cmu10g2256 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cmu05g2486 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 8.0e-48 187.6
Cmu09g1750 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cmu11g0008 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Cmu08g1086 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 2.4e-49 192.6
Cmu01g1793 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Cmu10g1661 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 4.1e-41 165.2
Cmu09g1750 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cmu10g2256 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cmu01g1894 . 128 334 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cmu08g1086 . 55 246 ZF-HD Transcription Factor Family AT5G65410 50.7 1.2e-44 177.2
Cmu05g2486 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 8.0e-48 187.6
Cmu09g1750 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cmu10g2256 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.9e-51 198.7
Cmu09g1750 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.1e-51 198.4
Cmu11g0008 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.2 5.1e-55 211.8
Cmu10g2256 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cmu09g1750 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.9e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6881 PF04770 ZF-HD_dimer 9.90E-29 No_clan Cmu TF