Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1751 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGGTACGCAGTTGATGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCGGCCTGCGGTTGCCACCGGAATTTCCATAGAAGGCAAGTTGGAACTGAGGTAGTTTGCGATTGCTCTTCATCACCCTCAAATGGAACTTGA 291 52.58 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33533069 33533359 + CmPI595203_09g017510.1 Cmu09g1751 424980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1751 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Cmu09g1751 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cmu09g1751 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu09g1751 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1264 Cmu-Chr4:27077320 Cmu09g1751 Cmu-Chr9:33533069 2.80E-26 dispersed
Cmu06g1674 Cmu-Chr6:27811526 Cmu09g1751 Cmu-Chr9:33533069 1.50E-26 dispersed
Cmu09g1751 Cmu-Chr9:33533069 Cmu11g0008 Cmu-Chr11:481676 3.80E-17 dispersed
Cmu09g1750 Cmu-Chr9:33520914 Cmu09g1751 Cmu-Chr9:33533069 7.90E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6882 PF04770 ZF-HD_dimer 3.30E-30 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1751 - - - 0.0