Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1751 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGGTACGCAGTTGATGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCGGCCTGCGGTTGCCACCGGAATTTCCATAGAAGGCAAGTTGGAACTGAGGTAGTTTGCGATTGCTCTTCATCACCCTCAAATGGAACTTGA 291 52.58 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33533069 33533359 + CmPI595203_09g017510.1 Cmu09g1751 424980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1751 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Cmu09g1751 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cmu09g1751 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu09g1751 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1751 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1264 Cmu-Chr4:27077320 Cmu09g1751 Cmu-Chr9:33533069 2.80E-26 dispersed
Cmu06g1674 Cmu-Chr6:27811526 Cmu09g1751 Cmu-Chr9:33533069 1.50E-26 dispersed
Cmu09g1751 Cmu-Chr9:33533069 Cmu11g0008 Cmu-Chr11:481676 3.80E-17 dispersed
Cmu09g1750 Cmu-Chr9:33520914 Cmu09g1751 Cmu-Chr9:33533069 7.90E-13 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g1751 . 1 95 Zinc finger-homeobox gene family AT3G28917 79.8 3.1e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6882 PF04770 ZF-HD_dimer 3.30E-30 No_clan Cmu TF