Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1757 ATGGCGGAACCAGCAGCAGAGCCTAAGGCATTACCCGAACCCGAAAAGAAGAAGGAACAGAGCCTTCCTTTTTACCAACTCTTCTCTTTTGCAGACAAATATGACTGGTTTCTCATGATCCTCGGTAGTTTCGGCGCCATTGTCCACGGCTCTTCCATGCCTGTTTTTTTCCTTCTTTTCGGCGAAATGGTTAACGGCTTCGGCAAAAACCAATCCAATTTTCACAAAATGACAGCAGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTTTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAGAGGCAAGTGAGTACATTGAGAAAGAAGTATTTAGAAGCTGTTTTGAAACAAGATGTTGGATTCTTCGACACTGACGCCAGAACAGGGGATGTTGTTTTCAGTGTTTCAACAGACACTCTTCTTGTACAAGATGCAATCAGCGAGAAGGTGGGGAACTTCATTCACTATCTTTCGACGTTTCTAGCTGGATTGGTTGTGGGTTTTGTGTCAGCATGGAGACTAGCTCTTCTGAGTATAGCAGTAATTCCAGGAATCGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGACTTACTTCAAAGAGTCGAGAATCCTATGCCAATGCTGGCATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTACGTTGGAGAAAGCAAAGCCCTGAATTCCTATTCAGATTCAATTCAAAACACATTGAAAATTGGTTACAAGGCAGGAATGGCTAAGGGGTTGGGTCTAGGTTGTACCTATGGCATTGCTTGTATGTCTTGGGCACTTGTCTTCTGGTATGCTGGAGTCTTCATCCGGAACGGCCAGTCCGATGGCGGCAAAGCCTTCACTGCTATATTCTCCGCCATCGTCGGTGGCATGAGCTTGGGGCAGTCATTTTCCAATTTGGGAGCATTCAGCAAAGGGAAAGCAGCAGGGTACAAATTGATGGAGATTATCAAACAGAGGCCTACAATTATTCAAGACCCATTAGATGGGAAATGTTTGGGTGAAGTTAATGGCAACATTGAGTTCAAAGATGTCACCTTTAGCTATCCATCCAGGCCGGACGTGATGATCTTTAGGGATTTCTCCATTTTTTTCCCTGCCGGGAAGACGGTGGCTGTCGTTGGTGGTAGCGGTTCCGGGAAAAGCACTGTTGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCAGGTTTTACTAGACAATGTAGACATCAAGACACTGCAATTGAAATGGCTAAGAGATCAAATTGGTCTAGTGAATCAGGAACCGGCTCTGTTTGCAACCACCATATACGAAAACATTCTCTACGGAAAACCCGATGCGACGATGGCGGAGGTGGAAGCTGCTGCGGCTGCAGCCAACGCTCATAGCTTCATCACATTGCTCCCCAATGGCTACGACACCCAAGTGGGCGAAAGAGGATTACAACTCTCCGGTGGACAAAAACAGAGGATTGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTCCTCGATGAAGCCACCAGCGCACTCGATGCAGGCTCTGAGAGCATAGTTCAAGAAGCTTTAGACCGTTTAATGGTCGGAAGAACAACAGTGGTGGTTGCACATCGATTATCAACAATAAGAAATGTCGATTCAATTGCAGTTATACAACAGGGGCAGGTAGTCGAAACAGGAACTCACGAAGAACTAATCGCTAAATCCGGTGCTTATTCCTCGTTAATTCGATTCCAAGAAATGGTTCGAAATAGAGAATTCTCAAACCCATCGACCCGTCGAACACGATCTTCACGACTGAGTCATTCGTTATCGACAAAATCGTTAAGCCTCCGCTCCGGCAGCCTCAGGAATTTGAGTTATTCGTATAGCACCGGCGCCGATGGGAGAATCGAAATGGTCTCAAACGCCGAAACTGACAGGAAAAACCCAGCCCCCGATGGCTATTTCATTCGTCTTCTTAAACTGAACGGCCCCGAATGGCCGTATTCGATAATGGGCGCTGTTGGGTCTGTTCTCTCTGGTTTCATCAGTCCAACATTTGCCATTGTTATGAGTAACATGATCGAGGTCTTCTATTACAGAAATTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCAGTGGTAGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAGAATCTCACTACCAGGGTCAGAAGAATGATGCTCGCAGCGATTTTGAGGAATGAAGTGGGATGGTTCGATGAAGAAGAACACAACTCAAGTTTAGTAGCAGCAAGATTGGCTACTGATGCAGCTGATGTAAAATCCGCCATTGCTGAAAGAATATCAGTGATACTACAAAATATGACTTCACTCTTCACTTCTTTTATAGTTGCATTTATTGTTGAATGGAGAGTTTCTCTTCTCATCCTTGCAGCCTTCCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTAAAAGGATTTGCTGGGGATACTGCTAAGGCCCACGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGTAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTGTTCCGCCACGAGCTTCGTGTCCCACAACGACAGAGTCTCCGCCGGAGCCAAACGGCAGGTGTCCTTTTCGGTATCTCACAGCTAGCTTTATATGCCTCTGAAGCTTTAGTTCTATGGTATGGTGTCCATTTGGTCAGCAATGGTGGATCAACATTCTCCAAAGTGATCAAAGTCTTTGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCATTAGAGGTGGTGAATCAATTGGTTCTGTTTTCTCAATTCTCGATCGCCCGACGAGGATCGACCCTGATGATCCTGAGGCAGAGACTGTTGAGACGCTTCGTGGGGAAATTGAACTCCGACATGTTGACTTCGCATACCCGTCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATTTGAGGATCAGGGCTGGTCAGAGCCAGGCATTGGTTGGAGCCAGTGGATCAGGGAAGAGTTCAGTGATTGCTTTGATTGAGAGATTCTACGATCCGCTTGCCGGGAAAGTTATGATCGACGGGAAGGACATTCGACGCCTGAACTTGCAATCCTTGAGGCTGAAAATTGGTTTGGTACAGCAAGAGCCAGCCTTATTTGCAGCCAGCATTTTTGACAATATTGCATATGGAAAAGATGGAGCAACAGAGGCAGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTGCATGGCTTTGTAAGTGGACTTCCTGATGGCTACAAGACACCAGTTGGGGAAAGAGGCGTTCAACTCTCTGGTGGCCAAAAACAACGCATAGCTATTGCCAGAGCTGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAAGCTACCAGTGCTCTCGACGCCGAGTCCGAGTGTGTGCTGCAAGAAGCTCTCGAAAGGCTCATGAGGGGCCGGACCACGGTGGTCGTGGCACATCGCCTGTCCACAATCAGGGGTGTGGACTGCATTGGCGTGGTCCAAGACGGTCGCATTGTCGAGCAAGGCAGCCATAATGAGCTGCTAAGCCGAGCTGAGGGGGCTTACTCAAGGCTCTTGCAGCTGCAACACCAACACATATGA 3753 46.71 MAEPAAEPKALPEPEKKKEQSLPFYQLFSFADKYDWFLMILGSFGAIVHGSSMPVFFLLFGEMVNGFGKNQSNFHKMTAEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQRPTIIQDPLDGKCLGEVNGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATMAEVEAAAAAANAHSFITLLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELRVPQRQSLRRSQTAGVLFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILDRPTRIDPDDPEAETVETLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPLAGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVVQDGRIVEQGSHNELLSRAEGAYSRLLQLQHQHI 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33620856 33627202 + CmPI595203_09g017570.1 Cmu09g1757 424986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1757 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu09g1757 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1757 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Cmu09g1757 1250 PANTHER ABC TRANSPORTER B FAMILY 9 621 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cmu09g1757 1250 Gene3D ABC transporter type 1, transmembrane domain 975 1248 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu09g1757 1250 Gene3D ABC transporter type 1, transmembrane domain 665 974 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu09g1757 1250 FunFam ABC transporter B family member 1 26 360 - -
Cmu09g1757 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1757 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1757 1250 SUPERFAMILY ABC transporter transmembrane region 673 993 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu09g1757 1250 FunFam ABC transporter B family member 1 665 974 - -
Cmu09g1757 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Cmu09g1757 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1757 1250 Gene3D - 353 601 IPR027417 -
Cmu09g1757 1250 Gene3D - 998 1247 IPR027417 -
Cmu09g1757 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Cmu09g1757 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Cmu09g1757 1250 Pfam ABC transporter transmembrane region 39 312 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu09g1757 1250 Pfam ABC transporter transmembrane region 686 956 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu09g1757 1250 Gene3D ABC transporter type 1, transmembrane domain 26 615 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu09g1757 1250 FunFam ABC transporter B family member 19 998 1247 - -
Cmu09g1757 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Cmu09g1757 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1757 1250 FunFam ABC transporter B family member 19 353 601 - -
Cmu09g1757 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu09g1757 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
Cmu09g1757 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu09g1757 1250 SMART AAA_5 1035 1221 IPR003593 GO:0016887(InterPro)
Cmu09g1757 1250 SMART AAA_5 390 582 IPR003593 GO:0016887(InterPro)
Cmu09g1757 1250 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0810 Cmu-Chr2:9338734 Cmu09g1757 Cmu-Chr9:33620856 4.10E-265 dispersed
Cmu02g0811 Cmu-Chr2:9352429 Cmu09g1757 Cmu-Chr9:33620856 2.60E-267 dispersed
Cmu04g1206 Cmu-Chr4:26611340 Cmu09g1757 Cmu-Chr9:33620856 1.60E-95 dispersed
Cmu05g1599 Cmu-Chr5:25669594 Cmu09g1757 Cmu-Chr9:33620856 0.00E+00 dispersed
Cmu05g2657 Cmu-Chr5:35148735 Cmu09g1757 Cmu-Chr9:33620856 1.20E-284 dispersed
Cmu09g0115 Cmu-Chr9:1319987 Cmu09g1757 Cmu-Chr9:33620856 3.80E-282 dispersed
Cmu09g0789 Cmu-Chr9:7649167 Cmu09g1757 Cmu-Chr9:33620856 6.00E-08 dispersed
Cmu09g1121 Cmu-Chr9:11670637 Cmu09g1757 Cmu-Chr9:33620856 0.00E+00 dispersed
Cmu09g1757 Cmu-Chr9:33620856 Cmu11g1334 Cmu-Chr11:25566718 2.2e-311 dispersed
Cmu09g1757 Cmu-Chr9:33620856 Cmu10g2730 Cmu-Chr10:33994906 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1757 K05658 - csv:101212585 2281.14