Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1761 ATGGCTTCCCCTCACCATTCCCATAGCTTCATGTTCCAATCCCGCCCCGCCGATCACCACGAATACGTCCCCTCCGCTTCCTTCAACGCCATTCCCTCCTGCCCTCCTCACCTCTACTTTCACGATGGAGTGGTTCCAGTGATGATGAAGAGATCGATGTCGTTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGGTTATCAGACGATGGATTGGCATTGGGAGAGAAGAAGAAGCGATTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTAGCCAAAGCTTTGGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGAAGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGCTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCAGCGGGGGGCGGCGCCACCATGAACCTAAAGAAAGAAAACGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATTAATCTCGACATCTCAAAGACACAAGCACCAATAAACGGCAGCGGCGGTGGTGGCGGAGGTAGAGCATGTTCTCAACCAGGAATAATCAAAGATCTTTTCCCATCGGCGGCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAACACGGGTCGTCCAGATCAACGGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATAGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 915 48.42 MASPHHSHSFMFQSRPADHHEYVPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAAGGGATMNLKKENERCWSSDNSCDINLDISKTQAPINGSGGGGGGRACSQPGIIKDLFPSAAFRSAAITQLLQHGSSRSTVDHPQVIQEESFSQMFNSIEEQQQTAAAAGFWPWSSDQNSHFH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33740479 33743300 + CmPI595203_09g017610.1 Cmu09g1761 424990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1761 304 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu09g1761 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 224 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cmu09g1761 304 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Cmu09g1761 304 Gene3D - 77 144 - -
Cmu09g1761 304 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677(InterPro)
Cmu09g1761 304 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677(InterPro)
Cmu09g1761 304 Pfam Homeodomain 81 134 IPR001356 GO:0003677(InterPro)
Cmu09g1761 304 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g1761 304 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677(InterPro)
Cmu09g1761 304 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Cmu09g1761 304 Coils Coil 128 169 - -
Cmu09g1761 304 SMART HOX_1 79 140 IPR001356 GO:0003677(InterPro)
Cmu09g1761 304 CDD homeodomain 81 137 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1803 Cmu-Chr1:31696736 Cmu09g1761 Cmu-Chr9:33740479 3.30E-25 dispersed
Cmu05g2502 Cmu-Chr5:33870270 Cmu09g1761 Cmu-Chr9:33740479 1.10E-50 dispersed
Cmu09g1761 Cmu-Chr9:33740479 Cmu10g1652 Cmu-Chr10:18194454 3.70E-26 dispersed
Cmu01g1405 Cmu-Chr1:27572278 Cmu09g1761 Cmu-Chr9:33740479 2.10E-25 wgd
Cmu05g2517 Cmu-Chr5:34015776 Cmu09g1761 Cmu-Chr9:33740479 1.20E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6885 PF00046 Homeodomain 2.90E-15 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1761 K09338 - csv:101212093 563.148