Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1802 ATGGCTCCTAGCTCTGTTGTTGTCACAATTGAGAAGCATAACACCTTCCCTTTAGTGGAAATCAATGCCTCTGACTCTTTGTTGCTTCCTGAGAAACAGAAGGCTGCTAGTCCCAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCATGGCTGGCTATGACTGTCAAGACTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAATTGTATAGGTTCATTAAGGCTTTTCTTGTTATTTCAATTGCGGGTTTGATCGTTGAAGTTGTTGCCCACTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTTGAGGTTCATGGGCTTGTTCAATGGTTTTATATTTCCTGGCTTTCGTTTCGAGTTGATTACATTGCTCCACTGGTATTAATACTTTCCAAGTTCTGCATTGTTCTGTTCCTGATCCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGTTGCTTTTGGATCAAGTTCAAGAAAATCAAACCCACGATTCAAGACGACGCTTATGATTTGGAAGATGCTTTAACTTTTCCTATGGTTCTTGTTCAAATTCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTAGATGATTCAGATGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGATTGATCCGAACTGGATACAAAGCTGGGAATCTCAAGTCTGCCATGGCTTGTGATTACGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTGACTATCCCTCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTTCAAGCTCGTTGGGCGTTTGTAAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGCGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGTGTTTGGAGAACGAAAGCACTTGAGGAATCCGGTGGCTGGCTTGAGCGGACGACTGTGGAAGATATGGATATTGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTATAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTCCCTTCAATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCCTTAGAAAACTCATACTTCCATTCTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAGAACACAATGTCTGTCACAAAGTTCAATGCCATGGTTTCGGGGCTATTCCAGCTGGGAAGTTCATACGAATGGGTTGTGACGAAGAAGACAGGACGATCATCTGAATCCGACTTCTTAGCATTCGCAGAGCGAGAGTCGAAAACATCAAATGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGACTCGAGTTGTTGAGTAAATTGAACCAACAAGAGAGGCAAAAGGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTCACTGCATCGGCTAGAAGCTTGCTGTCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGTTTGTCATTCCTGGTGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2001 41.83 MAPSSVVVTIEKHNTFPLVEINASDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKTVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLVISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYISWLSFRVDYIAPLVLILSKFCIVLFLIQSLDRLVLCFGCFWIKFKKIKPTIQDDAYDLEDALTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNEEKILRRHSESGLELLSKLNQQERQKGSKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLVVGLDLIGEQMN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34205044 34207332 + CmPI595203_09g018020.1 Cmu09g1802 425031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1802 666 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 195 421 IPR029044 -
Cmu09g1802 666 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 118 665 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cmu09g1802 666 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
Cmu09g1802 666 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
Cmu09g1802 666 Coils Coil 600 620 - -
Cmu09g1802 666 FunFam probable xyloglucan glycosyltransferase 5 196 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1802 K20887 - - csv:101208151 1243.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2691 Cmu-Chr5:35426018 Cmu09g1802 Cmu-Chr9:34205044 2.50E-272 dispersed
Cmu09g0816 Cmu-Chr9:7896124 Cmu09g1802 Cmu-Chr9:34205044 1.30E-239 dispersed
Cmu09g1802 Cmu-Chr9:34205044 Cmu10g2665 Cmu-Chr10:33460604 1.10E-107 dispersed
Cmu09g1802 Cmu-Chr9:34205044 Cmu08g0753 Cmu-Chr8:19840486 9.60E-112 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g1701 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.8e-57 217.2
Cmu05g2691 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cmu09g1802 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.4e-268 919.8
Cmu05g2701 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.3e-262 900.6
Cmu08g1612 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Cmu09g0816 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cmu05g2691 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cmu09g1802 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.4e-268 919.8
Cmu05g2701 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.3e-262 900.6
Cmu08g1612 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Cmu09g0816 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cmu05g2691 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cmu09g1802 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.4e-268 919.8
Cmu05g2701 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.3e-262 900.6
Cmu08g1612 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Cmu09g0816 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cmu09g1701 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.8e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33