Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1820 ATGTACCCATTGAAGCTCCGCCGTTTTTTGGCTCTTCTGATTCTGGGTTTAGTGGGACGGACGGTGGCTCTGTTTGGTGCTGCGTCGGGGAGTTGTCGGTTCCCGGCCGTGTACAACTTCGGCGACTCAAATTCAGATACAGGAGGAATATCGGCTGCACTCAATGCGATTCAACCACCCAATGGCGAAACCTTCTTTGGACATCCTTCTGGAAGGGCTTGTGATGGTCGTCTCATTATCGACTTTATTGCTGAGAAGCTGAAGTTGCCTTACCTGAGTGCATATCTGGACTCATTAGGAACAAGTTTTAGGCATGGAGCTAATTTTGCAACAGGAGGTTCGTCAATTCGTCCTGGTGGTTATAGCCCTTTTCATCTTGGCATTCAAGTATCACAGTTCATCCAATTCAAATCCCGCACCACAGATCTATACCACCGACTCCGCTCCAACAACAGGACATCAATACCAATCAAACGTATTGCAAGGCCCCAGGAGTTTTCAAAGGCGCTATATACGTTTGATATTGGACAGAATGATCTTGCCTATGGTTACCAACAGTCATCAGAAGAACAAGTTAGAGCCTCCATCCCAGATATTCTAAACACATTCGCTGAAGCTGTGCAACAATTGTACAAGGAAGGGGCAAGATATTTCTGGGTGCATAACACAGGTCCAATTGGATGTCTGCCTTACTCTATATTGTACAACAAAAGTCCAGATAATCGAGATAGCAACGGATGCGTGAAGAGCCAAAACGAAGTCTCTCAAGAATTCAATCGGCAGCTGAAGAGTCGGCTGCTAAAGTTGGGGAAAAAGCTTCCTCTAGCTAGAATTATATACGTAGACATGTATTCAGCCAAATATCTGCTCATTACCAAAGCAAAAACTCAAGGTTTTGTTAAGAATCCAGTAAAGTTTTGCTGTGGGAGTTACTATGGCTATCACATTGACTGTGGGAAAAGGGAAGTTGTGAATGGAACAACCCACCGTTGCCAGTTGACAAAGCTTGTCAAGCTCCCAGTAATGCATGATAAGGACGGTAATGAACATGGTGAACCTAATCTCCAACACTTCATGAGTACAAATTGGTTCGAATCCTCCACTCCCACGGTACAGAATATGCATGCCATTGCATTTGCAGCCACGCCTTGGGCGCGGACCATGCACAAGTGTGCAGCTTGTTTCAGACAATTCAACAAGATAGAGCATTTGGTAGATCATATGAGGACTTCTTTTCACTCACATCATGAACCCACTTGTGCCATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAATGCAAAAACATATATGCTACACGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCTTACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGGCTGTAAATTCTGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGACGGTTCGACTGTCATCGATAGCGGAAGAACTCGAGGCTCGGGCGCCGTGGCGTTAGCTTGCAAATATGTAGGTGGGGGCAGCGATGGGTCGCTGGACATATGCGCCAAGGTTTGCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCTGTCACAAATTATAGGTATGAAACGGTGGGAATTCGTCCAGAACACATTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGATATCCTCTACAATGGAGGTGAGAAGGCTAGGATTCTTGTGGGTCACTTTGTCGAAGATGATCTCAAACGTCTACAAATCGGATACCCATCCGTCATGATAAGGGACACAGCAAATTATCCGCCATTGATGAAGACGAGCAAGCTTTGCAATTCACTCAAATATCTAGCTCAAGTGTATCTAGGATTTGAGCTACAAAATGGGATACAAGAACCTTATGAAGAATGTATTGTGGCCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAACATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGCTAATTGGAGGGAAAATGAGCTTCAAAGGATGAGTCCAGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCGAGGATTTGA 2172 44.01 MYPLKLRRFLALLILGLVGRTVALFGAASGSCRFPAVYNFGDSNSDTGGISAALNAIQPPNGETFFGHPSGRACDGRLIIDFIAEKLKLPYLSAYLDSLGTSFRHGANFATGGSSIRPGGYSPFHLGIQVSQFIQFKSRTTDLYHRLRSNNRTSIPIKRIARPQEFSKALYTFDIGQNDLAYGYQQSSEEQVRASIPDILNTFAEAVQQLYKEGARYFWVHNTGPIGCLPYSILYNKSPDNRDSNGCVKSQNEVSQEFNRQLKSRLLKLGKKLPLARIIYVDMYSAKYLLITKAKTQGFVKNPVKFCCGSYYGYHIDCGKREVVNGTTHRCQLTKLVKLPVMHDKDGNEHGEPNLQHFMSTNWFESSTPTVQNMHAIAFAATPWARTMHKCAACFRQFNKIEHLVDHMRTSFHSHHEPTCAICKKHCRSLDSLREHLIGPLPKQECKNIYATRGCKFCLAILDSSYSQRLHQERCQFSAVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGSDGSLDICAKVCLIDESENVIFYSYVKPIIPVTNYRYETVGIRPEHIRDAMPLKQVQKKIQDILYNGGEKARILVGHFVEDDLKRLQIGYPSVMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFELQNGIQEPYEECIVAMRLYKRMRSQVHRIEKHPMASDPQNKNNFANWRENELQRMSPEQMLEISRSDYYCWCMDSRI 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34367689 34380669 - CmPI595203_09g018200.1 Cmu09g1820 425049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1820 723 CDD REX4_like 511 666 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Cmu09g1820 723 SMART exoiiiendus 509 674 IPR013520 -
Cmu09g1820 723 CDD SGNH_plant_lipase_like 35 320 IPR035669 -
Cmu09g1820 723 ProSitePatterns Zinc finger C2H2 type domain signature. 391 413 IPR013087 -
Cmu09g1820 723 SUPERFAMILY Ribonuclease H-like 524 670 IPR012337 -
Cmu09g1820 723 Pfam GDSL-like Lipase/Acylhydrolase 37 287 IPR001087 GO:0016788(InterPro)
Cmu09g1820 723 Gene3D SGNH hydrolase 25 334 IPR036514 -
Cmu09g1820 723 Gene3D Classic Zinc Finger 368 445 - -
Cmu09g1820 723 ProSiteProfiles Zinc finger C2H2 type domain profile. 389 418 IPR013087 -
Cmu09g1820 723 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 21 325 - -
Cmu09g1820 723 Gene3D - 507 688 IPR036397 GO:0003676(InterPro)
Cmu09g1820 723 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0385 Cmu-Chr4:12296601 Cmu09g1820 Cmu-Chr9:34367689 1.30E-78 dispersed
Cmu09g1820 Cmu-Chr9:34367689 Cmu10g2137 Cmu-Chr10:27397075 1.80E-95 dispersed
Cmu09g1819 Cmu-Chr9:34347287 Cmu09g1820 Cmu-Chr9:34367689 8.40E-68 tandem
Cmu09g1820 Cmu-Chr9:34367689 Cmu09g1821 Cmu-Chr9:34382057 5.70E-150 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6888 PF00657 Lipase_GDSL 4.70E-35 CL0264 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1820 - - - 0.0