Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1829 ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGTGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGTGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCCACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTTATGACATTACAAAATGCTCCCCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTGCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCGTTAGGGGAACGTTTTAAGAAGCTAAAGGCCAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATGTGTCAAACATAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAATAATGAGTTTACCTTTCCAGTAGAGGGTTCATCCCTTGAAAGACTGAATCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTTAACGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGATATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACGGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAACAAGAGGTCTTTTAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGACTATTGCAGATGGTGATAGGGACTATTTGCAGTCAAAACCTCCATCTGAGCGTAATTACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCATCAGATGGAACAGTTGTTCAACGCAAGGGGCGGTTCAAAGTTACTTCAGCGGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCTGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGTTTCAGAGGCGGTCACCAGTGACCTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTTGTTGAGGAATTAGAGAAGCAAAAGTTGAAAAATGCGGAGTTTGAAAAACACATGATTTCTATGGCAAATAAAGAGAAAACATAA 2016 41.96 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDVSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLNHPTAAASQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKTIADGDRDYLQSKPPSERNYSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKCLEQMTGKNPDVSEAVTSDLLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEFEKHMISMANKEKT 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34456048 34465097 + CmPI595203_09g018290.1 Cmu09g1829 425058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1829 671 Gene3D Transferase(Phosphotransferase) domain 1 97 311 - -
Cmu09g1829 671 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Cmu09g1829 671 SMART serkin_6 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1829 671 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1829 671 MobiDBLite consensus disorder prediction 481 507 - -
Cmu09g1829 671 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Cmu09g1829 671 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Cmu09g1829 671 MobiDBLite consensus disorder prediction 449 464 - -
Cmu09g1829 671 CDD STKc_OSR1_SPAK 14 277 - -
Cmu09g1829 671 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1829 671 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 657 IPR047173 GO:0043539(InterPro)
Cmu09g1829 671 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cmu09g1829 671 Coils Coil 627 661 - -
Cmu09g1829 671 MobiDBLite consensus disorder prediction 437 464 - -
Cmu09g1829 671 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0665 Cmu-Chr6:7571930 Cmu09g1829 Cmu-Chr9:34456048 6.60E-36 dispersed
Cmu09g1829 Cmu-Chr9:34456048 Cmu10g2050 Cmu-Chr10:26273580 3.20E-163 dispersed
Cmu09g1829 Cmu-Chr9:34456048 Cmu05g0488 Cmu-Chr5:4108463 3.50E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75811 PF00069 Pkinase 2.80E-60 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1829 K08835 - csv:101205102 1324.3