Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1851 ATGGCTTCTTCAAGCTTCTCAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCCGATTGCATATTTGCGCCCTACTTTCCTCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTAAATTCTCTAGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGTTGTGTCGGGGCCATCTCCGCTCTACAAAGACAAGTCATTCGCTTGCAGAAAGAGCTCGATGCTACAAATGCTGATTTAGTGCGATATGCAAGCGGGGGCGCTCGCCCGCCCTCGCAATTTGGAAGAAGGGCAGCAACTGCCTCGATGACTCGCCATCATTCTGACCTGTCTTTTCTTTCTCCCTTGAGTAGTAATGATCATGATGATCCTTATTGCCATGATAAAGAGGAAGACAATTGA 492 48.78 MASSSFSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISALQRQVIRLQKELDATNADLVRYASGGARPPSQFGRRAATASMTRHHSDLSFLSPLSSNDHDDPYCHDKEEDN 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34644362 34644853 - CmPI595203_09g018510.1 Cmu09g1851 425080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1851 163 MobiDBLite consensus disorder prediction 134 148 - -
Cmu09g1851 163 Coils Coil 89 109 - -
Cmu09g1851 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cmu09g1851 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 118 - -
Cmu09g1851 163 MobiDBLite consensus disorder prediction 119 163 - -
Cmu09g1851 163 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1851 Cmu-Chr9:34644362 Cmu11g1129 Cmu-Chr11:21248884 8.00E-44 dispersed
Cmu08g1640 Cmu-Chr8:28088326 Cmu09g1851 Cmu-Chr9:34644362 1.40E-17 transposed
Cmu01g1297 Cmu-Chr1:25547676 Cmu09g1851 Cmu-Chr9:34644362 4.30E-45 wgd
Cmu10g2152 Cmu-Chr10:27552403 Cmu09g1851 Cmu-Chr9:34644362 2.90E-58 wgd
Cmu06g1772 Cmu-Chr6:28767374 Cmu09g1851 Cmu-Chr9:34644362 1.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6891 PF03195 LOB 3.20E-42 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1851 - - - 0.0