Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1858 ATGGGGTCCGGTAATGGGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTTGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCGCATGGCAAAGTGCACAAGGGGAAATATAAAGACCAAAATGTTGCAATTAAAATAATTCGGAAAGGTGAAACCCCAGAAGATATTGCCAAAACTGAGGCACGCTTTGCTCGGGAGGTTGCTATGTTATCCAGAGTTCAACACAAGAATCTTGCGAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTAAGGAAGTACCTGTTGAGTATAAGGCCAAGGTGCTTGGACTTCAATGAGGCAGTTGGCTTTGCACTTGATATTGCACGTGCAATGGAATGCTTGCATTCGCATGGCATCATTCACCGTGACCTCAAGCCTGAGAATTTGATCTTGACTGCAGACCACAAAACCGTTAAACTTGCTGATTTTGGTCTTGCTAGAGAAGAGTCGGTAACAGAGATGATGACGGCTGAAACTGGGACTTACAGATGGATGGCTCCGGAGCTATACAGTACAGTAACTTTACGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTATCCGAAATAAGTTGCCTTTCGAAGGCATGTCAAATCTACAAGCAGCATATGCAGCTGCTTTTAAGAATTTACGACCGACTGCTGAGAACCTCCCACCGGATTTAGCACCTATTGTGACTTCCTGTTGGACAGAGGACCCAAACGATCGGCCTAACTTCAACCAAATCATACAAATGCTCTTGAAATGTCTATCCACCATTCCACAACCAGAGTATGTTGCACCACCACCATTGATGCACCCACCTGAGAATGCAGTTTTGCCGCCAGAGTCTCCTGGAACAAGTTCTTTGATGGCAGCCACAAGACATGGCACGAGGGAAGTCCTGAACAGCGAGATGGAAGAGAAACCGAGTAGTTTCTTCTCGTGTTTCACTGGTAACTGTTATTGA 1065 44.98 MGSGNGLCSKEFDLDAKWLVDPKQIFVGPRIGEGAHGKVHKGKYKDQNVAIKIIRKGETPEDIAKTEARFAREVAMLSRVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDFNEAVGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIIRNKLPFEGMSNLQAAYAAAFKNLRPTAENLPPDLAPIVTSCWTEDPNDRPNFNQIIQMLLKCLSTIPQPEYVAPPPLMHPPENAVLPPESPGTSSLMAATRHGTREVLNSEMEEKPSSFFSCFTGNCY 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34711557 34714448 + CmPI595203_09g018580.1 Cmu09g1858 425087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1858 354 SMART serkin_6 25 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1858 354 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Cmu09g1858 354 Gene3D Transferase(Phosphotransferase) domain 1 106 297 - -
Cmu09g1858 354 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1858 354 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1858 354 PRINTS Tyrosine kinase catalytic domain signature 256 278 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1858 354 PRINTS Tyrosine kinase catalytic domain signature 213 235 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1858 354 Pfam Protein tyrosine and serine/threonine kinase 30 285 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1858 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g1858 354 ProSiteProfiles Protein kinase domain profile. 25 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g1858 354 FunFam Kinase suppressor of Ras 1 14 104 - -
Cmu09g1858 354 PANTHER SERINE-THREONINE PROTEIN KINASE 20 286 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu09g1858 354 CDD STKc_MAP3K-like 31 285 - -
Cmu09g1858 354 ProSitePatterns Protein kinases ATP-binding region signature. 31 56 IPR017441 GO:0005524(InterPro)
Cmu09g1858 354 SUPERFAMILY Protein kinase-like (PK-like) 17 320 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1858 Cmu-Chr9:34711557 Cmu10g2969 Cmu-Chr10:35915022 2.50E-114 dispersed
Cmu10g2140 Cmu-Chr10:27410753 Cmu09g1858 Cmu-Chr9:34711557 4.70E-150 wgd
Cmu06g1786 Cmu-Chr6:28879435 Cmu09g1858 Cmu-Chr9:34711557 2.60E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75812 PF07714 PK_Tyr_Ser-Thr 3.10E-58 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1858 - - - 0.0