Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1873 ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCAACATCCTAATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATTGGATTCGGTAAAAACGCCATCGGCGGCAAAAACGGCCGTTTCTACTTAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACATGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGTCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGTTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGACATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTCGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCTGCTTCCAGCTATGCAAGAGCTTACAGCCTCAGTGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACTGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG 1245 49.56 MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHQHPNLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYLVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34862403 34865852 + CmPI595203_09g018730.1 Cmu09g1873 425102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1873 414 Pfam Pectate lyase 146 331 IPR002022 -
Cmu09g1873 414 FunFam Pectate lyase 65 407 - -
Cmu09g1873 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Cmu09g1873 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Cmu09g1873 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Cmu09g1873 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Cmu09g1873 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Cmu09g1873 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Cmu09g1873 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Cmu09g1873 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Cmu09g1873 414 Gene3D - 65 407 IPR012334 -
Cmu09g1873 414 SMART amb_all 140 337 IPR002022 -
Cmu09g1873 414 PANTHER PECTATE LYASE 18-RELATED 20 411 IPR045032 GO:0030570(InterPro)
Cmu09g1873 414 SUPERFAMILY Pectin lyase-like 49 409 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1053 Cmu-Chr3:5074673 Cmu09g1873 Cmu-Chr9:34862403 1.30E-121 dispersed
Cmu06g0763 Cmu-Chr6:9141077 Cmu09g1873 Cmu-Chr9:34862403 2.40E-168 dispersed
Cmu08g0727 Cmu-Chr8:19623118 Cmu09g1873 Cmu-Chr9:34862403 5.80E-144 dispersed
Cmu08g1687 Cmu-Chr8:28428660 Cmu09g1873 Cmu-Chr9:34862403 2.20E-185 dispersed
Cmu09g1873 Cmu-Chr9:34862403 Cmu10g2242 Cmu-Chr10:28521823 1.00E-127 dispersed
Cmu09g1873 Cmu-Chr9:34862403 Cmu05g0385 Cmu-Chr5:3284639 5.30E-169 transposed
Cmu09g1873 Cmu-Chr9:34862403 Cmu07g0223 Cmu-Chr7:2223283 5.30E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1873 K01728 - csv:101217834 778.089