Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1886 ATGGCAGCAACCATTTCCACAATCTTTCTAATATCACTCTCTAATTTCTTTCTAATAATGTCATTAGGAGTGGAAAGCAGAGCACTTACCGGAGGTCTTTACGGCGCCGGACCATGGCAGACTGCCCACGCTACTTTCTACGGCGGCAATGACGCCTCCGGCACAATGGGCGGGGCGTGCGGTTATGGCAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGCTCAGCACAGCTCTGTTCAACGACGGCTACAGCTGCGGGGCTTGTTTTGAGATCAAGTGCGTGAATGACCCACAATGGTGCCATGCCGGTAACCCCTCCATCTTTGTCACAGCCACCAATTTTTGTCCTCCCAATTACGCTCTACCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTTGACCTCTCCATGCCCATGTTTCTTAAAATCGCCCAATATCGCGCGGGCATCGTCCCCGTCTCCTTTCGCAGGGTGGCATGTCGGAGGGAAGGAGGGATGAGGTTTACGATCAATGGATTCAAATATTTCAATTTGGTATTGATAACCAATGTGGGTGGAGCAGGGGATATTGTGAGTGTGAGCATCAAGGGGTCGAAGACAGGGTGGATGAGTATGACACCTATCCGTCGATTCGTGTCTCGCGGGCGGAAATCATCAAAAGAGGGGGACATTTTTAATCTCTCTGGTACGAGGGCTCTTTCAAGCTCAAAGGAGAGGATAGAAAACTTCACACCAATCACAACCTTCGAGCATTCAAGTTTTGTTGATTTAGACTCTGAAGTTATGGAGGAGCAGTTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTAAATGAAAATGCTTCTTCATCTGAAGATGCTTCATTGGATTTGTCATTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGATGATCATTTTCCAGCATCTCTTCTGGATCTCCCTTGTGTAGTGGAATCCTATAAAACATACGATGATACTGTTCTAATCAAAACTGCAGACATTGGCCAGATGATCATGGTTAGAGAACCGGGTGACCCTGCTCCAGAGTCGACTGAGTATAGGCATGGTTTGACCCCTCCTATGAGGGATGCTCGAAAACGTAGATTTCGAAGAGAGCCAGATTTAAATCCTGAGCTTGTACGGCGAGTGGAGAAAGATTTACTAAACATCATGGCAGGAGGAACTACCGAAAATGCAGATATCCTTGATACTTTATTGGCTGAGCAACAGGATGATAGAGATGAGAATCCTCATCATGCAAGTGCAAAGCCTGCATCCGCACCTGCAGCAAAGCCTGATGTAATGGAAACTGAAACAAATGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGATTAG 1416 47.81 MAATISTIFLISLSNFFLIMSLGVESRALTGGLYGAGPWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVGGAGDIVSVSIKGSKTGWMSMTPIRRFVSRGRKSSKEGDIFNLSGTRALSSSKERIENFTPITTFEHSSFVDLDSEVMEEQFVLRVPPSVAERIERLLNENASSSEDASLDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKTADIGQMIMVREPGDPAPESTEYRHGLTPPMRDARKRRFRREPDLNPELVRRVEKDLLNIMAGGTTENADILDTLLAEQQDDRDENPHHASAKPASAPAAKPDVMETETNVGEPERSDSDDSDHSID 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34982194 34987633 + CmPI595203_09g018860.1 Cmu09g1886 425115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1886 471 Pfam TAFII55 protein conserved region 268 404 IPR006751 GO:0005669(InterPro)|GO:0006367(InterPro)
Cmu09g1886 471 PANTHER EXPANSIN-A15 21 212 IPR002963 GO:0009664(InterPro)
Cmu09g1886 471 MobiDBLite consensus disorder prediction 422 471 - -
Cmu09g1886 471 SMART dpbb_1 74 161 IPR007112 -
Cmu09g1886 471 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 217 IPR007117 -
Cmu09g1886 471 MobiDBLite consensus disorder prediction 452 471 - -
Cmu09g1886 471 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Cmu09g1886 471 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cmu09g1886 471 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Cmu09g1886 471 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576(InterPro)
Cmu09g1886 471 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Cmu09g1886 471 SMART TAFII55_N_2 268 412 IPR006751 GO:0005669(InterPro)|GO:0006367(InterPro)
Cmu09g1886 471 Pfam Lytic transglycolase 74 161 IPR009009 -
Cmu09g1886 471 FunFam Expansin 28 167 - -
Cmu09g1886 471 PRINTS Expansin signature 110 120 IPR002963 GO:0009664(InterPro)
Cmu09g1886 471 PRINTS Expansin signature 182 203 IPR002963 GO:0009664(InterPro)
Cmu09g1886 471 PRINTS Expansin signature 129 146 IPR002963 GO:0009664(InterPro)
Cmu09g1886 471 PRINTS Expansin signature 146 159 IPR002963 GO:0009664(InterPro)
Cmu09g1886 471 PRINTS Expansin signature 96 107 IPR002963 GO:0009664(InterPro)
Cmu09g1886 471 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
Cmu09g1886 471 PRINTS Expansin signature 170 182 IPR002963 GO:0009664(InterPro)
Cmu09g1886 471 MobiDBLite consensus disorder prediction 370 384 - -
Cmu09g1886 471 CDD DPBB_EXPA_N 38 166 - -
Cmu09g1886 471 CDD TAF7 269 415 IPR006751 GO:0005669(InterPro)|GO:0006367(InterPro)
Cmu09g1886 471 Pfam Expansin C-terminal domain 172 212 IPR007117 -
Cmu09g1886 471 Gene3D - 31 167 IPR036908 -
Cmu09g1886 471 MobiDBLite consensus disorder prediction 355 384 - -
Cmu09g1886 471 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1886 Cmu-Chr9:34982194 Cmu11g0982 Cmu-Chr11:15107540 3.20E-77 dispersed
Cmu02g2002 Cmu-Chr2:33783402 Cmu09g1886 Cmu-Chr9:34982194 2.20E-96 wgd
Cmu04g0854 Cmu-Chr4:23047064 Cmu09g1886 Cmu-Chr9:34982194 2.50E-95 wgd
Cmu07g0379 Cmu-Chr7:3820281 Cmu09g1886 Cmu-Chr9:34982194 1.10E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1886 - - - 0.0