Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1907 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAACTCAGCTACAAGGAAGTGGCTGTGAGACTAATAATGCTCAACACCTTCCACCTCCGGCACCGCCAACTAGCGGTGGCGGCGGTAGTGGACCTGGCTCGATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTGGCGAAGATACCACAACCGGAAGCCGGGTTAAAATGTCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACGTGCCGACGGTACTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGCAATAGGTCAAAATCTCCAGGGGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGACATAATTAGCCAACAACTGGGTCATCATCCTCCTCCTCCAACAACCCATTTGCCCTTTTTTTCTCAAAATTTACATCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCCCTTCAAATTCCTTCACTCCCATCATCAGCTGGAGGAGTTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATCCCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATCAAGATCATCATCATCATCAACAAGGAGCCGATTTTTCAAATTACCAGCGGTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAATAATAGCATGAAAATCTTGGAGGAGACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTAGTACTACAACAACAACAACACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGTAA 1077 41.97 MVFSSVPVFLDPPNWPSQQPTQLQGSGCETNNAQHLPPPAPPTSGGGGSGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLGHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGVESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMADQDHHHHQQGADFSNYQRLSKPLLESGFNTTTTTNHHQLENINNNNNNSMKILEETQGINNLSRNFLGIQPNDDQFWNSSTTTTTTPGNIAWSSDQISDHFNSTSSTTHLL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35135199 35136445 - CmPI595203_09g019070.1 Cmu09g1907 425136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1907 358 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu09g1907 358 Pfam Dof domain, zinc finger 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu09g1907 358 MobiDBLite consensus disorder prediction 1 59 - -
Cmu09g1907 358 MobiDBLite consensus disorder prediction 134 155 - -
Cmu09g1907 358 MobiDBLite consensus disorder prediction 116 155 - -
Cmu09g1907 358 MobiDBLite consensus disorder prediction 11 33 - -
Cmu09g1907 358 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu09g1907 358 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 276 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1907 Cmu-Chr9:35135199 Cmu10g1633 Cmu-Chr10:15834123 5.10E-27 dispersed
Cmu10g2821 Cmu-Chr10:34753018 Cmu09g1907 Cmu-Chr9:35135199 1.60E-41 wgd
Cmu02g2021 Cmu-Chr2:33927175 Cmu09g1907 Cmu-Chr9:35135199 1.90E-39 wgd
Cmu04g0866 Cmu-Chr4:23198980 Cmu09g1907 Cmu-Chr9:35135199 3.30E-34 wgd
Cmu07g0371 Cmu-Chr7:3678771 Cmu09g1907 Cmu-Chr9:35135199 9.30E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6894 PF02701 zf-Dof 4.50E-31 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1907 - - - 0.0