Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1952 ATGGATTCGGCCCATCATCGTGGACACGGCCAAGACTCCCCACTTTTTCCCCTAAAAGTTCCACCGGTCGACGGCCGAGCCGACGGCGCCGATAGCGACGGCGGCAGCAACTTGGGGTTGGTTTTGTTTTGTTGTTCTGTCTGCCTTGCCGCTGATGCTGTTAAAAATAATAATAAGAGTCACACAGAGCCTGAGCCCACTCGGTCTACTACTAACTTTTCTTTTCCCAACGCCCTCTCTGATCTAAGAGAGAAAGCTGCTGAGATTCAGAGAAGAAATGGAGATTTTGTGCTGAGGTATTGTAATGGAGGATTGTTTGTTTTCAGTCTCTTTCTGGGTTTTCCCTCTAAATCTCCTATTTCATATGAATTTGTTTCACGGGAAATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGCGGAGGTAGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAACCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCGAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTAGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCTAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCGGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGGCCAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAACGTTGCAGAGAGAGATTTTACCGGCGGGAGCAGATAG 1842 50.16 MDSAHHRGHGQDSPLFPLKVPPVDGRADGADSDGGSNLGLVLFCCSVCLAADAVKNNNKSHTEPEPTRSTTNFSFPNALSDLREKAAEIQRRNGDFVLRYCNGGLFVFSLFLGFPSKSPISYEFVSREMGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIATIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRSSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPANSRRHSGPPKIDASPIKNVAERDFTGGSR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35600847 35608544 - CmPI595203_09g019520.1 Cmu09g1952 425181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1952 613 SMART iq_5 241 263 IPR000048 GO:0005515(InterPro)
Cmu09g1952 613 MobiDBLite consensus disorder prediction 1 31 - -
Cmu09g1952 613 PANTHER IQ-DOMAIN 5-RELATED 133 566 - -
Cmu09g1952 613 MobiDBLite consensus disorder prediction 505 522 - -
Cmu09g1952 613 Pfam Protein of unknown function (DUF4005) 515 588 IPR025064 -
Cmu09g1952 613 MobiDBLite consensus disorder prediction 452 479 - -
Cmu09g1952 613 MobiDBLite consensus disorder prediction 448 613 - -
Cmu09g1952 613 ProSiteProfiles IQ motif profile. 242 270 - -
Cmu09g1952 613 Pfam IQ calmodulin-binding motif 245 263 IPR000048 GO:0005515(InterPro)
Cmu09g1952 613 MobiDBLite consensus disorder prediction 523 539 - -
Cmu09g1952 613 Coils Coil 305 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1952 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0039 Cmu-Chr1:324979 Cmu09g1952 Cmu-Chr9:35600847 1.30E-25 dispersed
Cmu03g1772 Cmu-Chr3:23563207 Cmu09g1952 Cmu-Chr9:35600847 8.60E-33 dispersed
Cmu04g0918 Cmu-Chr4:23663822 Cmu09g1952 Cmu-Chr9:35600847 2.00E-106 dispersed
Cmu05g1008 Cmu-Chr5:9315675 Cmu09g1952 Cmu-Chr9:35600847 5.80E-23 dispersed
Cmu05g1839 Cmu-Chr5:28444706 Cmu09g1952 Cmu-Chr9:35600847 2.20E-27 dispersed
Cmu05g2144 Cmu-Chr5:30893121 Cmu09g1952 Cmu-Chr9:35600847 6.50E-109 dispersed
Cmu06g0115 Cmu-Chr6:1054277 Cmu09g1952 Cmu-Chr9:35600847 1.00E-25 dispersed
Cmu06g0624 Cmu-Chr6:7019374 Cmu09g1952 Cmu-Chr9:35600847 2.20E-15 dispersed
Cmu07g0985 Cmu-Chr7:24572503 Cmu09g1952 Cmu-Chr9:35600847 4.40E-25 dispersed
Cmu07g1498 Cmu-Chr7:30146659 Cmu09g1952 Cmu-Chr9:35600847 1.70E-21 dispersed
Cmu09g0023 Cmu-Chr9:529912 Cmu09g1952 Cmu-Chr9:35600847 2.00E-09 dispersed
Cmu09g0071 Cmu-Chr9:913359 Cmu09g1952 Cmu-Chr9:35600847 1.50E-20 dispersed
Cmu01g0729 Cmu-Chr1:8205121 Cmu09g1952 Cmu-Chr9:35600847 1.80E-27 transposed
Cmu01g2294 Cmu-Chr1:35199519 Cmu09g1952 Cmu-Chr9:35600847 9.90E-33 transposed
Cmu02g0247 Cmu-Chr2:2308686 Cmu09g1952 Cmu-Chr9:35600847 5.80E-14 transposed
Cmu05g0018 Cmu-Chr5:251208 Cmu09g1952 Cmu-Chr9:35600847 2.60E-30 transposed
Cmu06g0268 Cmu-Chr6:3055150 Cmu09g1952 Cmu-Chr9:35600847 6.00E-29 transposed
Cmu10g2316 Cmu-Chr10:29424115 Cmu09g1952 Cmu-Chr9:35600847 6.40E-20 transposed
Cmu10g2771 Cmu-Chr10:34284696 Cmu09g1952 Cmu-Chr9:35600847 1.90E-76 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g1952 . 129 607 IQD Protein Family AT3G52290 54.2 2.4e-103 372.9
Cmu05g2144 . 1766 1975 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cmu03g1772 . 36 443 IQD Protein Family AT3G22190 57.8 9.5e-97 350.9
Cmu05g1839 . 1 438 IQD Protein Family AT2G26180 61.6 3.9e-119 425.2
Cmu01g2294 . 25 298 IQD Protein Family AT2G33990 52.1 7.3e-63 237.7
Cmu07g0985 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cmu01g2294 . 25 246 IQD Protein Family AT3G15050 50.9 1.5e-55 213.4
Cmu07g0985 . 112 285 IQD Protein Family AT3G15050 62.1 3.6e-54 208.8
Cmu01g0729 . 119 471 IQD Protein Family AT5G13460 50.4 8.2e-75 278.1
Cmu06g0268 . 1 509 IQD Protein Family AT4G00820 51.4 7.5e-115 411.4
Cmu06g0268 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
Cmu09g0023 . 1 399 IQD Protein Family AT3G16490 50.5 1.2e-66 250.8
Cmu03g2201 . 1 391 IQD Protein Family AT3G16490 50.2 5.2e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40