Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1955 ATGAGTGCATTGAAAGCAGATGACAGACAGGGGGAGAAGTTCCCTTCTTACCCTCCGAGATCAAATATGAACTCCACGAGTGGATCAGTTGATGGAGGAGCTACTGACTATCCAGATTTGGATTCATCAATGGATGCAACAGAGGAAGAAGTGAAGATTACACTTTGGATTCATGAAGACTTACTTTTAGTAGCGTTCTTGATTCTTCCTTGCTGCGAGTGTTTAAGCGCAGTTCCTTCTCCTTCCTCAGATTCAAGTATGGGTAAGGAGAAGGTTCACATCAACATTGTTGTCATTGGCCATGTCGATTCTGGAAAGTCGACCACCACTGGCCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAGCGTGGTATCACAATTGATATTGCTCTGTGGAAGTTCGAGACAACCAAGTACTACTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGTGCTGTTCTTATCATTGATTCAACTACCGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACACGTGAACATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGATGGATGCCACGACTCCCAAATACTCTAGGTCTAGGTACGATGAAATCGTCAAGGAAGTTTCATCCTACCTCAAGAAGGTTGGGTACAACCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACAAACCTCGACTGGTACAAGGGCCCTACCCTTCTGGAGGCTCTCGACCAAGTCCATGAGCCTAAGAGACCATCAGACAAACCCCTTCGTCTTCCACTTCAGGATGTTTACAAGATTGGAGGCATAGGAACTGTTCCAGTAGGTCGTGTCGAAACCGGTATTCTAAAACCCGGTATGGTCGTAACCTTTGCCCCATCTGGACTTACTACTGAAGTAAAGTCTGTTGAGATGCACCATGAAGCTCTTCAAGAAGCTCTCCCTGGTGACAATGTGGGGTTCAACGTGAAGAATGTCGCCGTGAAAGATCTCAAGCGTGGTTATGTTGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCTCACATTGCAGTCAAATTTGCCGAGATTTTAACGAAGATTGACAGACGATCTGGAAAAGAACTGGAGAAAGAGCCCAAGTTCTTGAAAAATGGGGATGCTGGATTTGTTAAGATGATTCCCACCAAGCCTATGGTGGTGGAGACATTCTCTGAGTATCCTCCACTTGGGCGATTTGCAGTCAGGGACATGCGGCAAACTGTGGCTGTTGGTGTCATCAAAAGCGTTGAAAAGAAGGATCCAAGCGGTGCTAAGGTCACCAAATCAGCTGCTAAGAAATCTGGTAAGTGA 1608 46.08 MSALKADDRQGEKFPSYPPRSNMNSTSGSVDGGATDYPDLDSSMDATEEEVKITLWIHEDLLLVAFLILPCCECLSAVPSPSSDSSMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSGK 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35629666 35633443 + CmPI595203_09g019550.1 Cmu09g1955 425184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1955 535 MobiDBLite consensus disorder prediction 17 32 - -
Cmu09g1955 535 PRINTS GTP-binding elongation factor signature 154 162 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1955 535 PRINTS GTP-binding elongation factor signature 234 243 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1955 535 PRINTS GTP-binding elongation factor signature 174 184 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1955 535 PRINTS GTP-binding elongation factor signature 190 201 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1955 535 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1955 535 PANTHER TRANSLATION FACTOR 90 513 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Cmu09g1955 535 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 412 515 IPR009001 -
Cmu09g1955 535 CDD EF1_alpha_II 316 406 - -
Cmu09g1955 535 Gene3D - 81 314 IPR027417 -
Cmu09g1955 535 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 316 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1955 535 CDD EF1_alpha 95 313 - -
Cmu09g1955 535 Pfam Elongation factor Tu domain 2 334 399 IPR004161 GO:0005525(InterPro)
Cmu09g1955 535 FunFam Elongation factor 1-alpha 87 312 - -
Cmu09g1955 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 335 IPR027417 -
Cmu09g1955 535 CDD EF1_alpha_III 409 512 - -
Cmu09g1955 535 Gene3D Translation factors 409 516 - -
Cmu09g1955 535 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 147 162 IPR031157 -
Cmu09g1955 535 MobiDBLite consensus disorder prediction 1 42 - -
Cmu09g1955 535 Pfam Elongation factor Tu GTP binding domain 92 309 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu09g1955 535 NCBIfam translation elongation factor EF-1 subunit alpha 87 519 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cmu09g1955 535 Gene3D Translation factors 315 402 - -
Cmu09g1955 535 FunFam Elongation factor 1-alpha 409 516 - -
Cmu09g1955 535 Hamap Elongation factor Tu [tuf]. 88 518 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cmu09g1955 535 FunFam Elongation factor 1-alpha 315 402 - -
Cmu09g1955 535 SUPERFAMILY Translation proteins 312 407 IPR009000 -
Cmu09g1955 535 Pfam GTP-eEF1A C-terminal domain-like 413 513 IPR054696 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1955 Cmu-Chr9:35629666 Cmu09g1957 Cmu-Chr9:35643633 1.90E-259 dispersed
Cmu09g1955 Cmu-Chr9:35629666 Cmu09g1956 Cmu-Chr9:35637359 1.90E-259 tandem
Cmu02g2090 Cmu-Chr2:34558785 Cmu09g1955 Cmu-Chr9:35629666 5.30E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1955 K03231 - csv:105434427 895.575