Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu09g1964 | ATGACCAATGAGATCCGCAGCAGCTGGAACATACACCGCCGGCGAAAGTCACTGGGCAGCAGTGAACAGTGGCGCTCACCTCCGGCGAACGTTACTCACAATAGGGGGCAATTATTCCTCGGCGATTCAGACCCACCACCCCGGCAGGCTCCCGGCGACCCCTCTTCTTCCTCGGCAAACGGCAATATTCGGCTTCTTCGTCCACTTTGTCACTGTTTTTTCTTCTTATCGAGGATGACCAATCAGTTGAGAAGTAGTGTAAACCGAAGGCGAGACTTCACAGACAAGTATAAGTGGAAGAAGCAAAGGATAATCCAGTCTGCTGAGGAGGAGATTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGACAAGAGACTTGGATGGTTGCTCACTTTTACTCCTTCATCTTGTAAGGATGAGGATACTGAAAAAGTCTACAGTTGTATTGATCTTTATTTTGTCACACAGGATGGCAGCAGTTTCAAATCGAAATATAAGTTTCGTCCTTATTTTTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGATTATTTGAGACGACGTTATAAAGGTCAAATAGCTGATATTGAGATTTCAGAAAAAGAAGACCTTGATCTTACAAATCATTTGTCGGGATTGCACAAGGCATATTTAAAGCTATCCTTTGACGCTGTTCAAGAATTGATGAATGTAAAGAGTGAATTATTGCATGTTGTTGAAAGCAATAGGGAGAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGGGTCGGCAACTTTTGTTTTTTGTCATTTGACACAAACCTCTTCGACAGATTTGCGGTGTGGACAGTGATATGTGCATTCGATATTGAGACCACAAAACTACCACTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATGAAGGGTTCTTCATAGTGAGCAATGTGAAAAATGAGTTAGAGCTTCTCAAACTTTGGTTTGCCCATATGCGAGAGCTGAAACCTGGTATCTACGTCACCTATAACGGTGACTATTTTGACTGGCCATTTCTTGAAAGCAGAACAGCATATCATGGGCTTAAAATGAGTGATGAAGTAGGATTTCAATGTGACAAGAATCAGGGAGAATGTCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAAGGTAGCCATGGTTTGAAGGCTGCCACAAAAGCGAAACTGGGGTACGATCCTCTTGAAGTGAATCCAGAGGATATGGTGCGGTTTGCAAAGGAAAAACCTCAGATGATGGCTACCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCCGATGAGGTGTTGCGCAAGGGAAGTGGGACGCTTTGTGAAATGCTTTTAATGGTTCAGGCTTACGAGGCTAATGTAGTGTGTCCTAACAAACATCAATCAGATCCAGAAAAGTTCCATAACAATCGGCTTCTTGAAAGCGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGACTTGATTCATCTGCTTATGATCAATTGATAAACAATCTAGATCGAGATTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGACTTGGAATCGGTGTCAAACTATAGTGATGTGAAGAATGCTATTATGGAAAAGCTTATTCGATTGCGGGATGAGCCTATGCGTGAAGAGTGCCCTCTGATCTATCACCTTGATGTAGCTGCAATGTATCCTAACATCATTTTAACAAATAGGCTTCAGCCGCCATCAGTAGTAACAGATGAGGTTTGCACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTACGAAAACTTAAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAGAAGCGACTATTATCATCTAAAGAGGCAAATTGAGTCTGAGTTTGTCGATAGTGGTAATGTTCGAGTGTCAAAACAATTTCTTGAACTTCCGAAGTTGGAGCAACAAGCAAAACTGAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATCGAGTCACTGAAGTTCGAGAAGCGGGGATCTGTATGAGGGAAAACTCCTTCTATATCGACACTGTTCGTAGTTTTCGAGATAGAAGATATGAATACAAAGGGCTCAATAAAGTTTGGAAAGGGAAACTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTGGTTCTGTATGATTCTTTACAACTTGCTCATAAATGTATCCTTAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCACCTGCTAATTAAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCGGAGAACTTTACCTTTAAAACAAAAGACTTGAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAAGAACAACACAAATGATCAGTACCAAACACTTGTAGGTCCTGTGAGGAAAATATATGAAACGCGAAGCGAATGCTCAATTGAATTTGAAGTCGATGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACCCTTGCAGAGCTGAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATACTATGGAGAGCAAAAGTCTTGTGCTGACTGCAAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTTCGATGTCAATACATAGTTGCATGCGAACCCAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATCAAGAGATAATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTTGGCATTTGA | 3324 | 41.0 | MTNEIRSSWNIHRRRKSLGSSEQWRSPPANVTHNRGQLFLGDSDPPPRQAPGDPSSSSANGNIRLLRPLCHCFFFLSRMTNQLRSSVNRRRDFTDKYKWKKQRIIQSAEEEIESKFGFNLFSEGDKRLGWLLTFTPSSCKDEDTEKVYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMETDVEDYLRRRYKGQIADIEISEKEDLDLTNHLSGLHKAYLKLSFDAVQELMNVKSELLHVVESNREKSDAAEAYDSILFGKRVGNFCFLSFDTNLFDRFAVWTVICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFIVSNVKNELELLKLWFAHMRELKPGIYVTYNGDYFDWPFLESRTAYHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAATKAKLGYDPLEVNPEDMVRFAKEKPQMMATYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYEANVVCPNKHQSDPEKFHNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDQLINNLDRDLQYAIQVEGKMDLESVSNYSDVKNAIMEKLIRLRDEPMREECPLIYHLDVAAMYPNIILTNRLQPPSVVTDEVCTACDFNRPGKTCLRKLKWVWRGEVFMAKRSDYYHLKRQIESEFVDSGNVRVSKQFLELPKLEQQAKLKERLKKYCQKAYKRVLDRVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNAHLLIKKIGKPLELDTDGIWCALPGSFPENFTFKTKDLKKLTISYPCVMLNVDVAKNNTNDQYQTLVGPVRKIYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDTMESKSLVLTAKRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDQEIMKFYVRKWCKISSEVGI | 1107 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 35704017 | 35717734 | - | CmPI595203_09g019640.1 | Cmu09g1964 | 425193 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu09g1964 | 1107 | FunFam | DNA polymerase epsilon catalytic subunit | 798 | 979 | - | - | |
Cmu09g1964 | 1107 | Gene3D | Palm domain of DNA polymerase | 626 | 914 | IPR023211 | - | |
Cmu09g1964 | 1107 | FunFam | DNA polymerase epsilon catalytic subunit | 284 | 512 | - | - | |
Cmu09g1964 | 1107 | SUPERFAMILY | Ribonuclease H-like | 146 | 534 | IPR012337 | - | |
Cmu09g1964 | 1107 | Gene3D | - | 285 | 512 | IPR036397 | GO:0003676(InterPro) | |
Cmu09g1964 | 1107 | SUPERFAMILY | DNA/RNA polymerases | 530 | 1085 | IPR043502 | - | |
Cmu09g1964 | 1107 | CDD | POLBc_epsilon | 547 | 1103 | - | - | |
Cmu09g1964 | 1107 | Gene3D | - | 963 | 1051 | IPR042087 | - | |
Cmu09g1964 | 1107 | MobiDBLite | consensus disorder prediction | 21 | 37 | - | - | |
Cmu09g1964 | 1107 | CDD | DNA_polB_epsilon_exo | 286 | 488 | - | - | |
Cmu09g1964 | 1107 | Pfam | DNA polymerase epsilon catalytic subunit A, thumb domain | 988 | 1033 | - | - | |
Cmu09g1964 | 1107 | Pfam | DNA polymerase epsilon catalytic subunit A, thumb domain | 1037 | 1102 | - | - | |
Cmu09g1964 | 1107 | Gene3D | DNA Polymerase, chain B, domain 1 | 139 | 266 | - | - | |
Cmu09g1964 | 1107 | Pfam | DNA polymerase family B, exonuclease domain | 286 | 443 | IPR006133 | - | |
Cmu09g1964 | 1107 | PANTHER | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 88 | 263 | IPR029703 | GO:0000278(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER) | |
Cmu09g1964 | 1107 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Cmu09g1964 | 1107 | SMART | polmehr3 | 283 | 885 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g2187 | Cmu-Chr2:35504225 | Cmu09g1964 | Cmu-Chr9:35704017 | 0.00E+00 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu09g1964 | K02324 | - | csv:101208568 | 1822.36 |