Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1964 ATGACCAATGAGATCCGCAGCAGCTGGAACATACACCGCCGGCGAAAGTCACTGGGCAGCAGTGAACAGTGGCGCTCACCTCCGGCGAACGTTACTCACAATAGGGGGCAATTATTCCTCGGCGATTCAGACCCACCACCCCGGCAGGCTCCCGGCGACCCCTCTTCTTCCTCGGCAAACGGCAATATTCGGCTTCTTCGTCCACTTTGTCACTGTTTTTTCTTCTTATCGAGGATGACCAATCAGTTGAGAAGTAGTGTAAACCGAAGGCGAGACTTCACAGACAAGTATAAGTGGAAGAAGCAAAGGATAATCCAGTCTGCTGAGGAGGAGATTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGACAAGAGACTTGGATGGTTGCTCACTTTTACTCCTTCATCTTGTAAGGATGAGGATACTGAAAAAGTCTACAGTTGTATTGATCTTTATTTTGTCACACAGGATGGCAGCAGTTTCAAATCGAAATATAAGTTTCGTCCTTATTTTTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGATTATTTGAGACGACGTTATAAAGGTCAAATAGCTGATATTGAGATTTCAGAAAAAGAAGACCTTGATCTTACAAATCATTTGTCGGGATTGCACAAGGCATATTTAAAGCTATCCTTTGACGCTGTTCAAGAATTGATGAATGTAAAGAGTGAATTATTGCATGTTGTTGAAAGCAATAGGGAGAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGGGTCGGCAACTTTTGTTTTTTGTCATTTGACACAAACCTCTTCGACAGATTTGCGGTGTGGACAGTGATATGTGCATTCGATATTGAGACCACAAAACTACCACTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATGAAGGGTTCTTCATAGTGAGCAATGTGAAAAATGAGTTAGAGCTTCTCAAACTTTGGTTTGCCCATATGCGAGAGCTGAAACCTGGTATCTACGTCACCTATAACGGTGACTATTTTGACTGGCCATTTCTTGAAAGCAGAACAGCATATCATGGGCTTAAAATGAGTGATGAAGTAGGATTTCAATGTGACAAGAATCAGGGAGAATGTCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAAGGTAGCCATGGTTTGAAGGCTGCCACAAAAGCGAAACTGGGGTACGATCCTCTTGAAGTGAATCCAGAGGATATGGTGCGGTTTGCAAAGGAAAAACCTCAGATGATGGCTACCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCCGATGAGGTGTTGCGCAAGGGAAGTGGGACGCTTTGTGAAATGCTTTTAATGGTTCAGGCTTACGAGGCTAATGTAGTGTGTCCTAACAAACATCAATCAGATCCAGAAAAGTTCCATAACAATCGGCTTCTTGAAAGCGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGACTTGATTCATCTGCTTATGATCAATTGATAAACAATCTAGATCGAGATTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGACTTGGAATCGGTGTCAAACTATAGTGATGTGAAGAATGCTATTATGGAAAAGCTTATTCGATTGCGGGATGAGCCTATGCGTGAAGAGTGCCCTCTGATCTATCACCTTGATGTAGCTGCAATGTATCCTAACATCATTTTAACAAATAGGCTTCAGCCGCCATCAGTAGTAACAGATGAGGTTTGCACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTACGAAAACTTAAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAGAAGCGACTATTATCATCTAAAGAGGCAAATTGAGTCTGAGTTTGTCGATAGTGGTAATGTTCGAGTGTCAAAACAATTTCTTGAACTTCCGAAGTTGGAGCAACAAGCAAAACTGAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATCGAGTCACTGAAGTTCGAGAAGCGGGGATCTGTATGAGGGAAAACTCCTTCTATATCGACACTGTTCGTAGTTTTCGAGATAGAAGATATGAATACAAAGGGCTCAATAAAGTTTGGAAAGGGAAACTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTGGTTCTGTATGATTCTTTACAACTTGCTCATAAATGTATCCTTAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCACCTGCTAATTAAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCGGAGAACTTTACCTTTAAAACAAAAGACTTGAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAAGAACAACACAAATGATCAGTACCAAACACTTGTAGGTCCTGTGAGGAAAATATATGAAACGCGAAGCGAATGCTCAATTGAATTTGAAGTCGATGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACCCTTGCAGAGCTGAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATACTATGGAGAGCAAAAGTCTTGTGCTGACTGCAAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTTCGATGTCAATACATAGTTGCATGCGAACCCAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATCAAGAGATAATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTTGGCATTTGA 3324 41.0 MTNEIRSSWNIHRRRKSLGSSEQWRSPPANVTHNRGQLFLGDSDPPPRQAPGDPSSSSANGNIRLLRPLCHCFFFLSRMTNQLRSSVNRRRDFTDKYKWKKQRIIQSAEEEIESKFGFNLFSEGDKRLGWLLTFTPSSCKDEDTEKVYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMETDVEDYLRRRYKGQIADIEISEKEDLDLTNHLSGLHKAYLKLSFDAVQELMNVKSELLHVVESNREKSDAAEAYDSILFGKRVGNFCFLSFDTNLFDRFAVWTVICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFIVSNVKNELELLKLWFAHMRELKPGIYVTYNGDYFDWPFLESRTAYHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAATKAKLGYDPLEVNPEDMVRFAKEKPQMMATYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYEANVVCPNKHQSDPEKFHNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDQLINNLDRDLQYAIQVEGKMDLESVSNYSDVKNAIMEKLIRLRDEPMREECPLIYHLDVAAMYPNIILTNRLQPPSVVTDEVCTACDFNRPGKTCLRKLKWVWRGEVFMAKRSDYYHLKRQIESEFVDSGNVRVSKQFLELPKLEQQAKLKERLKKYCQKAYKRVLDRVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNAHLLIKKIGKPLELDTDGIWCALPGSFPENFTFKTKDLKKLTISYPCVMLNVDVAKNNTNDQYQTLVGPVRKIYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDTMESKSLVLTAKRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDQEIMKFYVRKWCKISSEVGI 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35704017 35717734 - CmPI595203_09g019640.1 Cmu09g1964 425193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1964 1107 FunFam DNA polymerase epsilon catalytic subunit 798 979 - -
Cmu09g1964 1107 Gene3D Palm domain of DNA polymerase 626 914 IPR023211 -
Cmu09g1964 1107 FunFam DNA polymerase epsilon catalytic subunit 284 512 - -
Cmu09g1964 1107 SUPERFAMILY Ribonuclease H-like 146 534 IPR012337 -
Cmu09g1964 1107 Gene3D - 285 512 IPR036397 GO:0003676(InterPro)
Cmu09g1964 1107 SUPERFAMILY DNA/RNA polymerases 530 1085 IPR043502 -
Cmu09g1964 1107 CDD POLBc_epsilon 547 1103 - -
Cmu09g1964 1107 Gene3D - 963 1051 IPR042087 -
Cmu09g1964 1107 MobiDBLite consensus disorder prediction 21 37 - -
Cmu09g1964 1107 CDD DNA_polB_epsilon_exo 286 488 - -
Cmu09g1964 1107 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 988 1033 - -
Cmu09g1964 1107 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 1037 1102 - -
Cmu09g1964 1107 Gene3D DNA Polymerase, chain B, domain 1 139 266 - -
Cmu09g1964 1107 Pfam DNA polymerase family B, exonuclease domain 286 443 IPR006133 -
Cmu09g1964 1107 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 88 263 IPR029703 GO:0000278(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Cmu09g1964 1107 MobiDBLite consensus disorder prediction 1 60 - -
Cmu09g1964 1107 SMART polmehr3 283 885 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2187 Cmu-Chr2:35504225 Cmu09g1964 Cmu-Chr9:35704017 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1964 K02324 - csv:101208568 1822.36