Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1970 ATGTCTTCATCGCTCTGTTCCTCAATTCGGCCATTGCCACCGCACTACTGGCGGCGGAAGAACTTCAGATTCTTCCTATTGCTTCAATCAAACAGATGCATTTGCTTCGCACCTCGCTTCGTTGCTTGCTCGAACAACGACGACTCTGTTGCAATACCCAGACCTACGCCGCTGGCTTTCGATCCTGCGGAGGATCTGTACGGACTTGGCATCGATTTAAAACCTAGGTATGTAGCTTCTAGGGCACCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAAAGAGTTACCATGTCCAAGTTGCCGAGGTAGGGGCTATGCGCCGTGTACGGAATGTGGAATTGAAAGATCCCGTGCTGATTGTTCCGTGTGTAATGGAAAGGGTATAGTGACCTGCCACCAATGTCTGGGGGATCGTGTCATATGGGAAGAGTCTATTGATGAACGACCATGGGAGAAAGCACGCTCCACTTCTCCGTTAAGAATGAAGGAAGATGATGAAGTCGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCAAAGCGTGTTTACCAATCCCCTCCTCCTGAAGTTGGTTTAAAGATCAGTCGATCATTAAAAAGTCTCAATGCCAAAACAGGTATATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCTGCTCTTCATGCCCAGAGAGTGGCTGCAATTAAGAAAGCTAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTTAACGATCCAGAAAACCGTCGAAAGCGGAGCATTGCAATGAAAGGAGTAAAATTTTACTGCAAAAACTGCGGCCGTGAAGGACATCGAAGACACTATTGTCCAGAACTTAAGGAAGCAATTGATAGGCGATTCAGATGTCGAGTATGTGGAGAGAAGGGCCATAACCGGAGGACTTGTGAGAAGTCTAGGTCGAATAGTATACCGATGACCGCAACAATACAGCGCCATTGCAAGATATGCGGTGTGAAGGGCCACAACAGGAGGAACTGTCAGAAGTCCAAGTTGAGCAATCCAACTAACCTACGAATAAATTATGCACATCGTCGGAGCAGTCGCAATGTGTTGAGGCTGAATTTGATCAGTGAAAATAGCAGAGTGAGGCAGTATCATTGTAGGATCTGCAATAAAAACGGTCACAGTCAGCAGAACTGTCCCAATATTGATAGGAAAGGCGAAAGCTGTGCTCGGGAAAAGATCAGGATGCCATGGATCACTCATTTGAATGTATCCTTGTTCTAG 1284 45.48 MSSSLCSSIRPLPPHYWRRKNFRFFLLLQSNRCICFAPRFVACSNNDDSVAIPRPTPLAFDPAEDLYGLGIDLKPRYVASRAPEPRSWFGPNGQYIKELPCPSCRGRGYAPCTECGIERSRADCSVCNGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGIFSKRMKIIHRDPALHAQRVAAIKKAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEAIDRRFRCRVCGEKGHNRRTCEKSRSNSIPMTATIQRHCKICGVKGHNRRNCQKSKLSNPTNLRINYAHRRSSRNVLRLNLISENSRVRQYHCRICNKNGHSQQNCPNIDRKGESCAREKIRMPWITHLNVSLF 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35764730 35773284 + CmPI595203_09g019700.1 Cmu09g1970 425199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1970 427 ProSiteProfiles Zinc finger CCHC-type profile. 386 401 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu09g1970 427 Gene3D - 272 323 - -
Cmu09g1970 427 SUPERFAMILY Retrovirus zinc finger-like domains 272 318 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu09g1970 427 SUPERFAMILY Retrovirus zinc finger-like domains 378 408 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu09g1970 427 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 93 351 IPR051714 GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER)
Cmu09g1970 427 Gene3D - 325 412 - -
Cmu09g1970 427 ProSiteProfiles Zinc finger CCHC-type profile. 275 290 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu09g1970 427 Coils Coil 164 184 - -
Cmu09g1970 427 SMART c2hcfinal6 274 290 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu09g1970 427 SMART c2hcfinal6 300 316 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu09g1970 427 SMART c2hcfinal6 331 347 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu09g1970 427 SMART c2hcfinal6 385 401 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu09g1970 427 ProSiteProfiles Zinc finger CCHC-type profile. 300 316 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1970 - - - 0.0