Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g1973 ATGTCGATCTCTTCTCCCTCCGACTCCTTCATTGACTCTCACTTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCCGGAGAGTCGCCGGAGTACTCCTCTGACCTTGAATCCCCGGCCAGCAGTGAGGATTCTATCGCTACTTTCATAGAGGACGAGAGACACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTAACACCTTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCTTGCATTGCTGCCGCTGCCTTACTCTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGGATCCTGAACAGGCCGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCGGCTAATGCAACCGTTAACAGCGGAGAGTCATCGGAGGAAGCCGCCGAAAGTGATACCACAGCTCCGAGTCAGAATCCGAGCCGGGTTGAGATATAGTGACTCGTCATCCTCCTCCTCCTCATCAAGGTTACCTTTTAAAAGAAGGAAGTTAAATAATTGCTTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1008 46.63 MSISSPSDSFIDSHLLCDEDSSGILSGESPEYSSDLESPASSEDSIATFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLDPEQAESWCNGLSKDKIVGCYRLMQPLTAESHRRKPPKVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCLWVEDDKENSKFRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35818802 35820869 - CmPI595203_09g019730.1 Cmu09g1973 425202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g1973 335 SMART cyclin_7 81 169 IPR013763 -
Cmu09g1973 335 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Cmu09g1973 335 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Cmu09g1973 335 Pfam Cyclin, C-terminal domain 178 279 IPR004367 -
Cmu09g1973 335 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Cmu09g1973 335 ProSitePatterns Cyclins signature. 76 107 IPR048258 -
Cmu09g1973 335 SUPERFAMILY Cyclin-like 160 277 IPR036915 -
Cmu09g1973 335 Pfam Cyclin, N-terminal domain 45 176 IPR006671 -
Cmu09g1973 335 Gene3D - 59 176 - -
Cmu09g1973 335 PANTHER CYCLINS 35 272 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu09g1973 335 SMART Cyclin_C_2 178 311 IPR004367 -
Cmu09g1973 335 FunFam D2/4-type cyclin 59 176 - -
Cmu09g1973 335 Gene3D - 49 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2557 Cmu-Chr5:34338005 Cmu09g1973 Cmu-Chr9:35818802 3.10E-125 dispersed
Cmu09g1973 Cmu-Chr9:35818802 Cmu10g1798 Cmu-Chr10:22379054 8.10E-51 dispersed
Cmu09g1973 Cmu-Chr9:35818802 Cmu08g1090 Cmu-Chr8:23201762 8.40E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g1973 K18810 - csv:101210686 617.846