Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g2001 ATGCCTGAGAAAGAGAGCCACAATGTTGTTACAGAGCCTCGTTTGGTAGCTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTAGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACATATATGCTGCAGGGAACTGTGACACATGAAGATTTTGAAGGGCACAAGGGAACAATAGGAGCAGGTGACTTGCAATGGATGACTGCAGGTAGAGGAATTGTACATTCAGAAATGCCTGCAGCCCAAGGGACCCAAAAGGGCCTCCAACTATGGATCAACCTCTCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGGAATTCCAGAAGCTTCAAAAGATGGAGTGAGAGTGAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCTCATCTCCAGCAGCTGATCCCGTCGTCATGGAACGCATTCGTGTACATTCTTGAAGGAGAAGGCGTCTTCGGCAGCTCAAAAGCGACATCAACAACAGCACATAACCTACTTCTTCTCGGTTTCGGGGACGGTTTAGAGGTTTGGAATAAGTCAGCCAAGCCTCTTAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAACTATACCAATGGATTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGGAATTTCTCTTGGGTTCTAA 906 44.81 MPEKESHNVVTEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGTVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKGIPEASKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLQQLIPSSWNAFVYILEGEGVFGSSKATSTTAHNLLLLGFGDGLEVWNKSAKPLRFILVGGEPLSEPVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAGISLGF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36097540 36100961 + CmPI595203_09g020010.1 Cmu09g2001 425230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g2001 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Cmu09g2001 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Cmu09g2001 301 CDD cupin_pirin_N 33 128 - -
Cmu09g2001 301 FunFam pirin 27 163 - -
Cmu09g2001 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Cmu09g2001 301 CDD cupin_pirin_C 176 252 - -
Cmu09g2001 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Cmu09g2001 301 PANTHER PIRIN-RELATED 7 294 IPR012093 -
Cmu09g2001 301 Pfam Pirin 33 126 IPR003829 -
Cmu09g2001 301 PIRSF Pirin 12 292 IPR012093 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1639 Cmu-Chr7:31685129 Cmu09g2001 Cmu-Chr9:36097540 1.70E-118 dispersed
Cmu09g2001 Cmu-Chr9:36097540 Cmu10g1278 Cmu-Chr10:5688773 1.60E-130 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g2001 K06911 - csv:101216351 592.038