Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g2018 ATGATGAAGAGGTTCTTGTGTTTCCTATGTAATAATAATCATAATGGGTTTTTCCCTCTCATTATCATTCTTGGTTTTCTTCTCTTGGGTGTCGCCGGAGAGATCTCCGGCGGCGGCGCTGGTGGAGGAGCAGAGAGATCATATGGTATGATAAGTTGGGATGATTTGCGTGTGGATGTTTCGTGGCGGCAGGGGATGAGCTCCGGCGAGGGGTTGGAGAATGGGACAAGAATAATTGTGGTGGATAAGAATGGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGTGGATATGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTGTATTCTTCCTGGCATTTACAGAGAGAAGGTATACATACCAATCACCAAACCATATATTTCCTTAATCGGAAACAAGAAACGAGTTACAGATACTGTTATTACATGGAACGACAAAGCTTCCGACAAAGATATGAATGGGGTCGAGCTTGGGACGTATAGAACAGCGACAGTTGCGATCGACTCTGACTACTTTTGTGCAACAGGAATCACATTTGAGAATACAATTGTTGCAAAGCCTGGAGATAAGGGAAGACAAGGTGTAGCTTTAAGAATAACAGGGGATAAGGCCATGTTTTATAGAGTAAAATTCTTAGGAGGACAAGATACACTTTTGGATGACATGGGCACACATTACTTCTATCAATGTCACATTCAAGGAAGTGTTGATTTCATATTTGGCACAGCTAGATCACTCTATGAGCAATGTGTTATAACTTCCACAGCAGAGAGCTTTGGAGCAATAGCAGCACATCATCGGGTCTCACCAAATGATGACACTGGGTTCTCTTTCGTGCGCAGCGTAATTAATGGAAGTGGCAAAGTACTCCTGGGAAGAGCATGGGGAAACTATTCAAGAATAATTTATTCTTACTGTTACATTGAAGATGTAATAACTCCATTAGGTTGGGATGACTGGAATGACCCATCAAGACAAAGGACAGTAGTTTTTGGGCAATATAATTGCAGGGGCAGTGGAGCTAACACACAAGGTTGGGTGCCATGGGCAAAGACTTTCAGCTATGAGGAAGTGAGACCTTTTGTAGATAGAAAATATATCAAAGGAGAACAATGGCTTAACTTATGA 1134 42.68 MMKRFLCFLCNNNHNGFFPLIIILGFLLLGVAGEISGGGAGGGAERSYGMISWDDLRVDVSWRQGMSSGEGLENGTRIIVVDKNGSGDSTTVQGAVDMVPHNNKQRVKICILPGIYREKVYIPITKPYISLIGNKKRVTDTVITWNDKASDKDMNGVELGTYRTATVAIDSDYFCATGITFENTIVAKPGDKGRQGVALRITGDKAMFYRVKFLGGQDTLLDDMGTHYFYQCHIQGSVDFIFGTARSLYEQCVITSTAESFGAIAAHHRVSPNDDTGFSFVRSVINGSGKVLLGRAWGNYSRIIYSYCYIEDVITPLGWDDWNDPSRQRTVVFGQYNCRGSGANTQGWVPWAKTFSYEEVRPFVDRKYIKGEQWLNL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36263546 36267852 + CmPI595203_09g020180.1 Cmu09g2018 425247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g2018 377 Gene3D - 74 377 IPR012334 -
Cmu09g2018 377 FunFam Pectinesterase 74 377 - -
Cmu09g2018 377 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 376 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cmu09g2018 377 ProSitePatterns Pectinesterase signature 2. 234 243 IPR033131 -
Cmu09g2018 377 SUPERFAMILY Pectin lyase-like 77 376 IPR011050 -
Cmu09g2018 377 Pfam Pectinesterase 79 371 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0468 Cmu-Chr9:4351970 Cmu09g2018 Cmu-Chr9:36263546 5.10E-73 dispersed
Cmu09g1729 Cmu-Chr9:33275554 Cmu09g2018 Cmu-Chr9:36263546 2.00E-54 dispersed
Cmu09g2018 Cmu-Chr9:36263546 Cmu11g0438 Cmu-Chr11:4806799 1.70E-65 dispersed
Cmu09g2018 Cmu-Chr9:36263546 Cmu08g1433 Cmu-Chr8:26454346 3.20E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g2018 K01051 - csv:101209316 632.484