Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g2048 ATGGACAAAGCTCTCCACGTTGCCATTTCAAATTGGGCGGGCCACTCTGAGCTTCCCCTTCTTCAACAATGGAGTATCTGGGTTAGGTTGGTCGTTAACGGGGGTTTGGAATTTCTGATTATGACGGAGGAAGATTCGCGGTTCAACTTTGGAAAAGGTCAATTTGCCATGATTCATTCTGGTTTCTTCCTTGCGGGACCGTCATTTAATTCTGATGCTACTACGTCTTTCATATCAATGCCGGTGTCTGGAGAAGATGGTGCTACGGGGGATGATATCGGAAACGATACGTCTGATTCCGTCCCCCCTTCTTTTTGGGTTAGAACAGCGATGAAAATATCGAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCAGGTTCGTGGATGGCGATGGAATTTGTAGCTCTGTTGTTTCAACTAATTATCTCAGCGTTTACTTTTGCCATTTCACGGGCTGAGAGTCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTGTGGCCGCCGTCGGTATAATTATCTAATGCAGGGAGATGGTGACAGTCTTTCAGATATAGAACACGAACAGCAGAGGAGCAATGAATCATCTAGGTACTCACATTTGATGAACAAATGCCGCACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTTGATTCTCGCCTAGCCTCGTTCCAGAGAGCTCCCAAGCTACATCTACTCTGCAGCTTCCTGCTAATTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCTTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTAGACGATCAAATTTCCCAGCTACCATGCTGGAAATACAAAGCAGTGGACGCCAACATCAACCCTGGAAGTCAACCCCACAATAGCAATACAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTTCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCGCTTTTTGATCTTCAGTCTCCATCTCTGTTTTCGCCTTCCTCTCCTTTTCCTCCACCATTTCCGAAAGCTCCCCTTTTCCCTCCATTTCCTTCTATTTACACTTCCATGTCCCCTTTTCCCTCTTTCTTTCCCCTTTTCCCCATTGCCTTTGAGGCTCATTCAAGTTACCCCTTCAAAGTTAAAACCCAACTGCCTGATCCTCGTGGGTTTGTTCTGGACTGTGACGATAAGGAAAGGTCGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCGTGTAACTGTGGTGGCACTGCTTCCTTTATCTCGAATTCGTTGGTGGAAGAAGATGGTGCAGGTGCGGATGTTAGAGACGACAATTCTGTTGCTCTGCCTGCATCTTTCTGGGTTAGGATAGCGATGAGAGTGTCCAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAATGGATCAAGATCGGATCTCAGGTCTGATCCTTTCAATTCTATCTCGTGGATGGCTATGGAGCTGGTAGCTATGGTGTTTCAGCTGGCCATCACAGTGTTTTTTCTTGCCATTTCAGAGACGGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTAGGATGCATTCTTAGTTTGTTGCTTCTCTATGGGCGATATTGGCATCTTTATTTAATGCGTGGAGACCATGTCGGCCTTTCTGAGACCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGTTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATTGTCGATTCTCGCTTCAGTTCGTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCCTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCGTTCATTCTCTTTCTGCTGCTATGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCATCAACCGACAAAGGAGCATCGGATGATCAAATATCTGAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGATAGTAACAAAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGACAGTTACCTTGTTCCCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTTTCAATCACATCTTCTTGCCCTCTCTGTAAGCAACAACTTCAAAAATAG 2445 44.34 MDKALHVAISNWAGHSELPLLQQWSIWVRLVVNGGLEFLIMTEEDSRFNFGKGQFAMIHSGFFLAGPSFNSDATTSFISMPVSGEDGATGDDIGNDTSDSVPPSFWVRTAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMEFVALLFQLIISAFTFAISRAESPVWPMRLWIGGYDLGCVLSLLLLCGRRRYNYLMQGDGDSLSDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASFQRAPKLHLLCSFLLIWNAICYSFPFILFLLLCCCVPLISSFIGYNINMGSTEKGALDDQISQLPCWKYKAVDANINPGSQPHNSNTGLPKEDPECCICLAKYIDKEEVRQLPCFHVFHLKCVDKWLAITSSCPLFDLQSPSLFSPSSPFPPPFPKAPLFPPFPSIYTSMSPFPSFFPLFPIAFEAHSSYPFKVKTQLPDPRGFVLDCDDKERSFSMINSGYFVSGPSCNCGGTASFISNSLVEEDGAGADVRDDNSVALPASFWVRIAMRVSRARWFIFLRRVFHYQNGSRSDLRSDPFNSISWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCILSLLLLYGRYWHLYLMRGDHVGLSETEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISELPCWRYKVSSMQPDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLSITSSCPLCKQQLQK 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36545155 36552715 + CmPI595203_09g020480.1 Cmu09g2048 425277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g2048 814 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 522 813 - -
Cmu09g2048 814 SUPERFAMILY RING/U-box 352 396 - -
Cmu09g2048 814 CDD RING-H2_RNF6-like 767 809 - -
Cmu09g2048 814 ProSiteProfiles Zinc finger RING-type profile. 768 809 IPR001841 -
Cmu09g2048 814 ProSiteProfiles Zinc finger RING-type profile. 357 396 IPR001841 -
Cmu09g2048 814 SMART ringv_2 767 809 IPR011016 GO:0008270(InterPro)
Cmu09g2048 814 SMART ring_2 357 397 IPR001841 -
Cmu09g2048 814 SMART ring_2 768 808 IPR001841 -
Cmu09g2048 814 Pfam Ring finger domain 767 809 IPR001841 -
Cmu09g2048 814 Pfam Ring finger domain 356 396 IPR001841 -
Cmu09g2048 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 400 IPR013083 -
Cmu09g2048 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 814 IPR013083 -
Cmu09g2048 814 SUPERFAMILY RING/U-box 763 812 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0576 Cmu-Chr8:17916512 Cmu09g2048 Cmu-Chr9:36545155 7.00E-06 dispersed
Cmu08g1226 Cmu-Chr8:24631607 Cmu09g2048 Cmu-Chr9:36545155 2.20E-45 dispersed
Cmu09g2048 Cmu-Chr9:36545155 Cmu10g2397 Cmu-Chr10:30423349 6.00E-31 dispersed
Cmu09g2048 Cmu-Chr9:36545155 Cmu07g1486 Cmu-Chr7:30021457 2.00E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g2048 - - - 0.0