Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g2053 ATGCAGAAAATGGCGCAGGGATGGTTCACGCAAGGGGGTAGTAGTGGCAGTGATAATCAACTCAAAACTTCCTCTTCATTGCTCGCCGATTGGAATTCTTACGCTGAATCACAAGCTGCTGATGATAGCAGCTCCAGTTTGGGAATTGGATTCGATCTCGAAAGTGCTGTTAGGTCCGCCAATGAAACTGTTTCAGGAACTTTCAGCGTGGTTTCTAAAGGAGTGAGAGAACTTCCTGGAAACTTCCAATCTGCCACTAGCAATGTTCCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATCTTCATTGCGTTTACCATGTTCCTCCCTGTCATGGTTCTGATGCCCCAAAAGTTCGCCATCTGCTTTACCCTTGGGTGTTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCAAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACGGTGATCTTTATTGGTAGTATGTTGGGCACCTTATACGTTTCCATGGGGCTCCACAGCTATATTCTCTCCGTTATCTTCTCTGTAGTACAGGTTCTTGCACTAGCATACTATGCTGTTTCATATTTCCCTGGTGGGTCTACTGGGATGAAGTTTCTTTCATCCGCTCTTACGTCTTCGGGTAGAATTCTTCTTGAATGGAAGAATAATCTAACAAGCCCCACAGATGTTTTGCGTTCGTGGAATCCGGAGGCGGCAACGCCATGTTCATGGTTTGGAGTTATGTGCAACTCCAATGGAGAGGTGGTGGAGATAGTCCTGACACTAGTGGAATTGGAAGGTACATTGCCTACAAATTTTCAGGCTCTCAAGTCCTTGAGGGTCCTTGTGATCTCTGAGACGAATATTACTGGAAGAATTCCGAAAGAATTCGGAGATTATAGTGAGCTCAATGTTCTTGATCTTAGCAGAAATTACCTCTTGGGGAAAATCCCAGAAGAGATTTGCAGGCTGAGCAAGCTGCAAGATTTGTTTCTTCATAACAATGATTTTGAAGGGAACCTACCCTTGAAGATTGGAAATCTTTCGAGCCTTGTGAATTTCCAAATCTCAGACAATAATATCGATGGTGAGGTTCCAAAGAGCATTGGAATGTTGAAGAATCTTTATCTTTTCAAAGCTGGAGGGAATAAATTTCTACAGGGTGTAGTGCCAAGGGAGATTGGAAACTGCAGCAGTTTAACGGTGTTAGGCTTATCCGACACCGGAATCTACGGTCCTCTTCCTTCATCAATAGGGATGCTGCAAAAAATCCAGACCATACACATGTATAGATCACAACTTTTTGGTCCACTCCCAGAAGAGATTACAAACTGTAGTGAACTGCAGACTCTTCGACTGTATCAGAATGGTATTTCTGGACGAATACCAAGACGAATCGGGGAGATGAAAAAGCTTAGCGTCCTTCTTCTATGGTTGAACTTGATGGAGGGTGAAATTCCAGAAGAAATTGGCAACTGCCAGGAACTGGTACTATTTGATTTTTCAGAAAATTCTCTAACGGGAACTATACCAAAAAGTCTAGGCCGACTTCCAAAACTCGAAGACATTCAACTAAGAATTAATCAGCTTACTGGTACAATACCACCTGAAATTTCTAATATTTCTACTTTGGTTCACCTGGAAATAGACAACAACAAATTATGTGGGGAGATACCAGTTGATATAGGTAACCTCAAGAACCTGCGTACATTGCTACTATGGGAGAACAAATTAACAGGCCCTATTCCCATCACCCTCCCAGACTGCCCAAATCTCACTTTGATTGATTTATCTTTCAATCAGTTAACAGGTCCAATACCGACACGGATTTTCGCTTTGAAAGGACTCACCAAACTTCTTATGTTATCAAATAATCTATCAGGGATTATTCCTCCTGAAATTGGAAACTGTACCACACTATCCAGGCTAAGACTGTCTAAAAATAAGCTTGGAGGTACTATTCCATCAGAGATGGGAAATCTCAGGAACTTAGAACTTCTTGACATGGGCCAAAACCTTTTTGTTGGAGGATTTCCTTCATCCTTTTCCACATGTAACAAGCTTGAGTCTCTTGACCTACGTTCAAATAGGCTCACTAGTCTTCCAAATACTCTGCCAAAGAGCTTAGTGTATTTTAATGCATCCAACAACAGGCTTAAAGGTCAGCTCAACCCCAACATTGGAGGATTGATGGAATTAACTAAACTAGACCTCAAAAACAACCAGCTTTCAGGGAAAATCCCAGCAGAAATTGTTTCCTGTGAGAAAATCCAGTTTTTAGACCTCAGCAACAATTTCTTCTCTGGAGAGCTCCCTAAGGAATTAGGTACATTTGCTGCACTTGAAATTGCTCTTAATCTAAGTTACAATCAATTCTCAGGTCAAATCCCATATGAATTCTCTGGTCTAACCAAGCTAAGTATTCTAGACCTCTCCCACAACAACTTCTCTGGGGAACTTAGCTTCCTTACAGATCTTGAAAACCTAGTCACTCTAAACATCTCCTACAACCATTTCTCTGGCAAATTGCCCGACAAACCCTTCTTTCAAAAGCTCCCTGAAAGCGCCGTTATCGGAAACAAAGACCTCATTTATGTTTCAGATGGGGGAGATACTCCTAAAGACAATAGGGAATCCAGCAACATAAGCAGAGAAGCAATACATATAGCCGTGCCTATCTTGATCAGCATAAGTGCAGTGCTGTTCTTTTTAGGATTCTACATGCTAATTCGAACCCACATGGCTCGTTTCATCCTCTTCACAGAAGGCAACAAATGGGAAATAACACTGTTTCAAAAGCTCGATTTCTCAATCGACCACATTATAAGAAACTTAACTGCATCCAATGTGATCGGCACAGGAAGCTCCGGTGCGGTTTACAGAATCACAACCCCAAATGGGCAAACAATGGCAGTGAAGAAAATGTGGTCCACCGACGAAAATGGAGCCTTCAACACCGAAATCGAAACTTTGGGATCAATTCGACACAAGAACATAATTAGATTACTGGGTTGGGGATCCAACAGGAGTTTGAAGCTCTTGTTTTATGATTACCTTCCAAATGGAAACTTGAGCTCCCTTATCCATGGCCCTGAAAAAGGAGAAGCAGAGTGGGAAGTCAGATATGAAGTCCTTTTAGGAGTGGCTCACGCTCTAGCTTATCTTCACCATGATTGTATTCCACCAATCGTACATGGCGATGTGAAAACTATGAATATCCTGCTCGGCCATGACTTCGAACCATACCTAGCCGACTTTGGGATAGCCAAAATCGTGAGTACAAAAAGCGGCAATGATAATTCAGAGACGCCATCTTTGAGACCTCAACTTGCTGGCTCTTTCGGCTACATGGCCCCTGAACAAGGGTCGATGTTGAGAGTTACAGAGAAGAGCGATGTGTATAGCTTCGGTGTGGTGATAATGGAAGTTCTAACAGGGCGGCACCCGCTGGACCCGACTTTACCAGGAGGATCCAATTTGGTGCAATGGGTTCAAGATCATTTCGCCACACACCGAAACACAGCCGACATTTTCGATTCAAAGCTCAGAGGAAGAACCGATCCCACAATCCACGAAATGATTCAAACCCTAGCCGTCGCATTGGTCTGTGCCAGCGTTAAGGCCGACGATCGACCGCCTATGAAAGATGTCGTCACCATGCTCGAGGAGATTCGACATGTCGAATCGGGAAGAGCTGCTACCGACGTCTCCATGCCGGAAATGGCGGTAGTGGTTCAATCGCCGCCGTAG 3780 43.39 MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSSSSLGIGFDLESAVRSANETVSGTFSVVSKGVRELPGNFQSATSNVPSGKALMYFGLFLATGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSMGLHSYILSVIFSVVQVLALAYYAVSYFPGGSTGMKFLSSALTSSGRILLEWKNNLTSPTDVLRSWNPEAATPCSWFGVMCNSNGEVVEIVLTLVELEGTLPTNFQALKSLRVLVISETNITGRIPKEFGDYSELNVLDLSRNYLLGKIPEEICRLSKLQDLFLHNNDFEGNLPLKIGNLSSLVNFQISDNNIDGEVPKSIGMLKNLYLFKAGGNKFLQGVVPREIGNCSSLTVLGLSDTGIYGPLPSSIGMLQKIQTIHMYRSQLFGPLPEEITNCSELQTLRLYQNGISGRIPRRIGEMKKLSVLLLWLNLMEGEIPEEIGNCQELVLFDFSENSLTGTIPKSLGRLPKLEDIQLRINQLTGTIPPEISNISTLVHLEIDNNKLCGEIPVDIGNLKNLRTLLLWENKLTGPIPITLPDCPNLTLIDLSFNQLTGPIPTRIFALKGLTKLLMLSNNLSGIIPPEIGNCTTLSRLRLSKNKLGGTIPSEMGNLRNLELLDMGQNLFVGGFPSSFSTCNKLESLDLRSNRLTSLPNTLPKSLVYFNASNNRLKGQLNPNIGGLMELTKLDLKNNQLSGKIPAEIVSCEKIQFLDLSNNFFSGELPKELGTFAALEIALNLSYNQFSGQIPYEFSGLTKLSILDLSHNNFSGELSFLTDLENLVTLNISYNHFSGKLPDKPFFQKLPESAVIGNKDLIYVSDGGDTPKDNRESSNISREAIHIAVPILISISAVLFFLGFYMLIRTHMARFILFTEGNKWEITLFQKLDFSIDHIIRNLTASNVIGTGSSGAVYRITTPNGQTMAVKKMWSTDENGAFNTEIETLGSIRHKNIIRLLGWGSNRSLKLLFYDYLPNGNLSSLIHGPEKGEAEWEVRYEVLLGVAHALAYLHHDCIPPIVHGDVKTMNILLGHDFEPYLADFGIAKIVSTKSGNDNSETPSLRPQLAGSFGYMAPEQGSMLRVTEKSDVYSFGVVIMEVLTGRHPLDPTLPGGSNLVQWVQDHFATHRNTADIFDSKLRGRTDPTIHEMIQTLAVALVCASVKADDRPPMKDVVTMLEEIRHVESGRAATDVSMPEMAVVVQSPP 1259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36590261 36603975 + CmPI595203_09g020530.1 Cmu09g2053 425282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g2053 1259 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 1029 1248 - -
Cmu09g2053 1259 ProSiteProfiles Leucine-rich repeat profile. 697 718 IPR001611 GO:0005515(InterPro)
Cmu09g2053 1259 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 712 878 - -
Cmu09g2053 1259 Gene3D Transferase(Phosphotransferase) domain 1 1029 1251 - -
Cmu09g2053 1259 SMART serkin_6 955 1231 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g2053 1259 SMART LRR_typ_2 527 551 IPR003591 -
Cmu09g2053 1259 SMART LRR_typ_2 695 718 IPR003591 -
Cmu09g2053 1259 SMART LRR_typ_2 334 358 IPR003591 -
Cmu09g2053 1259 SMART LRR_typ_2 575 599 IPR003591 -
Cmu09g2053 1259 SMART LRR_typ_2 740 764 IPR003591 -
Cmu09g2053 1259 SMART LRR_typ_2 813 836 IPR003591 -
Cmu09g2053 1259 SMART LRR_typ_2 600 623 IPR003591 -
Cmu09g2053 1259 FunFam Putative LRR receptor-like serine/threonine-protein kinase 940 1028 - -
Cmu09g2053 1259 MobiDBLite consensus disorder prediction 1 21 - -
Cmu09g2053 1259 Gene3D Ribonuclease Inhibitor 625 878 IPR032675 -
Cmu09g2053 1259 Gene3D Ribonuclease Inhibitor 380 529 IPR032675 -
Cmu09g2053 1259 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 617 711 - -
Cmu09g2053 1259 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 220 374 - -
Cmu09g2053 1259 ProSitePatterns Protein kinases ATP-binding region signature. 961 984 IPR017441 GO:0005524(InterPro)
Cmu09g2053 1259 SUPERFAMILY Protein kinase-like (PK-like) 946 1234 IPR011009 -
Cmu09g2053 1259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1073 1085 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g2053 1259 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515(InterPro)
Cmu09g2053 1259 Pfam Leucine rich repeat 649 708 IPR001611 GO:0005515(InterPro)
Cmu09g2053 1259 Pfam Protein kinase domain 958 1162 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g2053 1259 SUPERFAMILY RNI-like 510 851 - -
Cmu09g2053 1259 PANTHER OS04G0122200 PROTEIN 626 1233 IPR051809 -
Cmu09g2053 1259 Gene3D Ribonuclease Inhibitor 530 624 IPR032675 -
Cmu09g2053 1259 Pfam Leucine Rich Repeat 743 763 IPR001611 GO:0005515(InterPro)
Cmu09g2053 1259 Pfam Leucine Rich Repeat 795 813 IPR001611 GO:0005515(InterPro)
Cmu09g2053 1259 Pfam Leucine Rich Repeat 838 855 IPR001611 GO:0005515(InterPro)
Cmu09g2053 1259 Pfam Leucine Rich Repeat 767 787 IPR001611 GO:0005515(InterPro)
Cmu09g2053 1259 Pfam Leucine Rich Repeat 601 620 IPR001611 GO:0005515(InterPro)
Cmu09g2053 1259 Pfam Leucine Rich Repeat 554 575 IPR001611 GO:0005515(InterPro)
Cmu09g2053 1259 Gene3D Ribonuclease Inhibitor 221 379 IPR032675 -
Cmu09g2053 1259 SUPERFAMILY RNI-like 273 613 - -
Cmu09g2053 1259 Gene3D Phosphorylase Kinase; domain 1 934 1028 - -
Cmu09g2053 1259 Pfam Got1/Sft2-like family 95 207 IPR007305 GO:0016192(InterPro)
Cmu09g2053 1259 Pfam Leucine rich repeat N-terminal domain 224 260 IPR013210 -
Cmu09g2053 1259 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 394 608 - -
Cmu09g2053 1259 ProSiteProfiles Protein kinase domain profile. 955 1234 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1292 Cmu-Chr1:25476786 Cmu09g2053 Cmu-Chr9:36590261 8.10E-92 dispersed
Cmu09g0945 Cmu-Chr9:9420174 Cmu09g2053 Cmu-Chr9:36590261 6.90E-91 dispersed
Cmu09g2053 Cmu-Chr9:36590261 Cmu10g1617 Cmu-Chr10:14382863 8.90E-66 dispersed
Cmu09g2053 Cmu-Chr9:36590261 Cmu06g1765 Cmu-Chr6:28681434 1.90E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75816 PF00069 Pkinase 1.30E-35 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g2053 - - - 0.0