Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g2145 ATGTCAAATGATGAAGGCAAAAATGTGTACCAGCAGTATGATCCATTCCAATACAACCAGTTGGATATGAACCGTTCGATCTTCCATCAACAAGCGGCGACGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGATACCTCGTTGGATTACAACAGCCTGTCGAAGGCGTTCGACGTGTCGTGCTGTTCATCCGAAGTCATTTCTGCAGTGGACGACAGGTCGAAATCAAAGAAGGCTTCGACGACCACCCCAAATTCTTCAGTGTCGTCGTCGTCTAATGAAGCTGTAGTTGAAGAAGATTCAGTCAAGAGCAACAAAGAGGACATAAAAGGGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAGCATAACAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCACCTTGAAGATGGTTATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCAAGAAGCTACTATAGATGCACCAGCCAAAAATGTGTAGTGAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTAGTGATTACTACATATGAAGGCCAACACAACCACCATTGTCCAGCTACACTCCGAGGCCATTCTGCAGGGATCATGTCGTCTCCATTCTATGCATCAGCATCAACATCGGTAACGGCAGCCTCGTCGGGGCCTACGCTTCCACAAGAACTCTTCTCACATTTGTTACCGACAAATAACTGCCAAACCGACCCGGCCTCGATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG 879 43.46 MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQAATLDPALMSFTNFFDTSLDYNSLSKAFDVSCCSSEVISAVDDRSKSKKASTTTPNSSVSSSSNEAVVEEDSVKSNKEDIKGCENKDEEKSKKQNSITKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASTSVTAASSGPTLPQELFSHLLPTNNCQTDPASMMYQNLSLQQHLQMPDHYGLLQDLFTQK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37534896 37536713 + CmPI595203_09g021450.1 Cmu09g2145 425374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g2145 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 220 IPR044810 GO:0003700(InterPro)
Cmu09g2145 292 MobiDBLite consensus disorder prediction 101 139 - -
Cmu09g2145 292 Pfam WRKY DNA -binding domain 153 210 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g2145 292 SUPERFAMILY WRKY DNA-binding domain 145 212 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g2145 292 MobiDBLite consensus disorder prediction 74 139 - -
Cmu09g2145 292 FunFam WRKY transcription factor 57 138 212 - -
Cmu09g2145 292 MobiDBLite consensus disorder prediction 81 100 - -
Cmu09g2145 292 SMART WRKY_cls 152 211 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g2145 292 Gene3D WRKY domain 136 213 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu09g2145 292 ProSiteProfiles WRKY domain profile. 147 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2376 Cmu-Chr1:35802601 Cmu09g2145 Cmu-Chr9:37534896 2.70E-41 dispersed
Cmu06g0427 Cmu-Chr6:4857912 Cmu09g2145 Cmu-Chr9:37534896 5.00E-37 dispersed
Cmu08g0971 Cmu-Chr8:22005159 Cmu09g2145 Cmu-Chr9:37534896 9.90E-37 dispersed
Cmu09g0478 Cmu-Chr9:4466641 Cmu09g2145 Cmu-Chr9:37534896 1.20E-31 dispersed
Cmu09g2145 Cmu-Chr9:37534896 Cmu10g1929 Cmu-Chr10:24780120 3.30E-32 dispersed
Cmu02g1831 Cmu-Chr2:32237261 Cmu09g2145 Cmu-Chr9:37534896 2.20E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6908 PF03106 WRKY 5.40E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g2145 - - - 0.0