Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g2146 ATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTATTAATTCTCGGTATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAATTTCTCAATTTCTCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCCTATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCGCATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGGGAAGGGGGTTATGGGGTCGTCTACAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATCGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGGCAACATGGCACCCTTACTTGGGAGGCTCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTCCACAGAGACATAAAATCGAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAACGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACGGGAAGGGACCCAGTGGACTATGGTCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCATTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGTCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGAATCCAGTCAAGGCGAGGTCGGAAGTAAACCAGGTGAATCACAAAACAGACCCGTAAATGCATGA 1530 44.05 MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEVGSKPGESQNRPVNA 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37542689 37545744 - CmPI595203_09g021460.1 Cmu09g2146 425375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g2146 509 CDD STKc_IRAK 200 466 - -
Cmu09g2146 509 Coils Coil 214 234 - -
Cmu09g2146 509 FunFam Putative receptor-like serine/threonine-protein kinase 270 480 - -
Cmu09g2146 509 MobiDBLite consensus disorder prediction 463 509 - -
Cmu09g2146 509 Pfam Protein kinase domain 197 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g2146 509 MobiDBLite consensus disorder prediction 483 509 - -
Cmu09g2146 509 MobiDBLite consensus disorder prediction 463 482 - -
Cmu09g2146 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu09g2146 509 Gene3D Transferase(Phosphotransferase) domain 1 270 484 - -
Cmu09g2146 509 SUPERFAMILY Protein kinase-like (PK-like) 178 471 IPR011009 -
Cmu09g2146 509 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524(InterPro)
Cmu09g2146 509 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Cmu09g2146 509 ProSiteProfiles Protein kinase domain profile. 194 452 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu09g2146 509 FunFam Putative receptor-like protein kinase 176 269 - -
Cmu09g2146 509 PANTHER OS01G0323000 PROTEIN 7 489 IPR052232 -
Cmu09g2146 509 SMART serkin_6 194 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1465 Cmu-Chr2:28436592 Cmu09g2146 Cmu-Chr9:37542689 5.30E-149 dispersed
Cmu06g0403 Cmu-Chr6:4618965 Cmu09g2146 Cmu-Chr9:37542689 8.70E-155 dispersed
Cmu08g1542 Cmu-Chr8:27273886 Cmu09g2146 Cmu-Chr9:37542689 1.40E-145 dispersed
Cmu09g2146 Cmu-Chr9:37542689 Cmu11g0534 Cmu-Chr11:5829654 1.80E-78 dispersed
Cmu03g1353 Cmu-Chr3:8655836 Cmu09g2146 Cmu-Chr9:37542689 3.30E-35 transposed
Cmu02g1832 Cmu-Chr2:32243744 Cmu09g2146 Cmu-Chr9:37542689 1.80E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75819 PF00069 Pkinase 6.60E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g2146 - - - 0.0