Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g2179 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAACAACAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCCCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAACCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGCGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1173 49.36 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGATLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37863001 37865023 + CmPI595203_09g021790.1 Cmu09g2179 425408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g2179 390 FunFam Myb family transcription factor 31 89 - -
Cmu09g2179 390 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
Cmu09g2179 390 MobiDBLite consensus disorder prediction 324 342 - -
Cmu09g2179 390 MobiDBLite consensus disorder prediction 324 390 - -
Cmu09g2179 390 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Cmu09g2179 390 MobiDBLite consensus disorder prediction 343 360 - -
Cmu09g2179 390 Gene3D - 31 89 - -
Cmu09g2179 390 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cmu09g2179 390 MobiDBLite consensus disorder prediction 376 390 - -
Cmu09g2179 390 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Cmu09g2179 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 194 IPR046955 GO:0003700(InterPro)
Cmu09g2179 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g2179 Cmu-Chr9:37863001 Cmu11g0984 Cmu-Chr11:15202807 9.20E-30 dispersed
Cmu05g0357 Cmu-Chr5:3032904 Cmu09g2179 Cmu-Chr9:37863001 1.20E-41 transposed
Cmu07g0272 Cmu-Chr7:2695056 Cmu09g2179 Cmu-Chr9:37863001 7.90E-33 transposed
Cmu10g2094 Cmu-Chr10:26849092 Cmu09g2179 Cmu-Chr9:37863001 7.60E-37 transposed
Cmu02g1871 Cmu-Chr2:32636481 Cmu09g2179 Cmu-Chr9:37863001 3.80E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6912 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g2179 - - - 0.0