Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu09g2179 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAACAACAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCCCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAACCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGCGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1173 49.36 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGATLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37863001 37865023 + CmPI595203_09g021790.1 Cmu09g2179 425408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu09g2179 390 FunFam Myb family transcription factor 31 89 - -
Cmu09g2179 390 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
Cmu09g2179 390 MobiDBLite consensus disorder prediction 324 342 - -
Cmu09g2179 390 MobiDBLite consensus disorder prediction 324 390 - -
Cmu09g2179 390 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Cmu09g2179 390 MobiDBLite consensus disorder prediction 343 360 - -
Cmu09g2179 390 Gene3D - 31 89 - -
Cmu09g2179 390 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cmu09g2179 390 MobiDBLite consensus disorder prediction 376 390 - -
Cmu09g2179 390 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Cmu09g2179 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 194 IPR046955 GO:0003700(InterPro)
Cmu09g2179 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu09g2179 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g2179 Cmu-Chr9:37863001 Cmu11g0984 Cmu-Chr11:15202807 9.20E-30 dispersed
Cmu05g0357 Cmu-Chr5:3032904 Cmu09g2179 Cmu-Chr9:37863001 1.20E-41 transposed
Cmu07g0272 Cmu-Chr7:2695056 Cmu09g2179 Cmu-Chr9:37863001 7.90E-33 transposed
Cmu10g2094 Cmu-Chr10:26849092 Cmu09g2179 Cmu-Chr9:37863001 7.60E-37 transposed
Cmu02g1871 Cmu-Chr2:32636481 Cmu09g2179 Cmu-Chr9:37863001 3.80E-78 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0357 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.6e-88 322.4
Cmu09g2179 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.2e-42 168.3
Cmu02g1871 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cmu07g0272 . 87 235 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cmu01g2051 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cmu09g1113 . 202 406 G2-like Transcription Factor Family AT5G16560 51.7 7.1e-41 165.2
Cmu05g2006 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.4e-40 161.0
Cmu08g1485 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cmu05g2357 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.5e-53 204.9
Cmu08g0469 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.1e-52 201.4
Cmu03g0752 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 3.2e-60 229.2
Cmu04g0625 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cmu10g2389 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cmu05g0357 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.6e-88 322.4
Cmu09g2179 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.2e-42 168.3
Cmu02g1871 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cmu07g0272 . 87 235 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cmu01g2051 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cmu11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 1.2e-49 194.1
Cmu09g2179 . 1 390 G2-like Transcription Factor Family AT1G79430 53.5 4.6e-84 308.5
Cmu02g1871 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.3e-74 274.6
Cmu01g2050 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.1e-56 216.1
Cmu04g0625 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cmu10g2389 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.2e-82 301.6
Cmu04g0625 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.5e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6912 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Cmu TF