Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g0854 ATGGCCAAATTAACCGCAAAACGCCTTCTTCAGTTTTGGTGCTTCTTCATCCTCTTGTTTCCCATGCTTTCGGCTACTTCTCCACCGGATCTTGTGAAGATAGAGTGTTTGACTGTACCCGCCTCCCAATTTTCTAACTCAATCCTCTCCACCATCGATGTTGTACAACAGGTTATCGCCATTTTCTCTCCATTCACTAAATTACTCGGTGATTTACGCCTTTCCACCGCCGTTTCCGACTGTCTCGATTTGCTTGACTCTTCTGCTGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAAAATCCCAAGGCTAAAGACCACAGCACCGGAGATTTGAGTTCCGATCTGAAGACATGGCTGAGCGCTGCAGTGGTTAATCCAGAAACATGCATGGATGGATTTGAGGGCACCAATAGCATTATCAAAGGTCTAGTATCTGGAAGCATCAACCAGTTAACTTCACAGCTCTACGAGCTTCTTTCCATGGTCAAATCAATCCCCAATCAGCCGGCGGCTGACTTTCCTTCCTGGGTGAAATCTGAGGACCGGAACCTGCTGCAACTAAATGACTTCGCCGCCGATGCCACTGTGGCCGCCGATGGGACTGGGGATTTCACCAGTGTGATGGATGCTGTATTAGCAGCCCCTGACAATAGCATACAACGTTATGTTATATACATAAAGAGGGGTGTGTACTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAATCTAATGATGATTGGAGATGGAATTGATGCCACCACCATATCGGGTAATCGGAGTTTTATTGACGGTTGGACAACATTCCGTTCAGCGACATTTGCTGTAAGTGGAAGAGGATTCATAGCTCGAGACATAACATTCGAGAATACTGCAGGGCCACAGAAACATCAAGCAGTAGCACTTAGATCGGACTCGGATCTGTCGGTATTTTTTAGATGCCGTATTAGAGGATATCAAGACACTCTGTACACGCACACCATGCGCCAATTCTACCGCGAGTGCCAAATCAGTGGCACCGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAATTGTAGCATCCTCGCGAAGAAAGGTCTTCCCAATCAGAAAAACACCATCACTGCTCAAGGCCGGAAAGACCCAAACCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCGGATTCAGATCTTAAACCTTCGGTTAACACCACAGCTACATACCTTGGAAGACCATGGAAAGAATATTCTAGAACCATTATCATGCAGTCATTTATGAGCGACGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGCCGATTTTGCATTGAAGACACTATTCTACGCTGAGTTTATGAATTATGGACCAGGGGCGGGATTGGCGAAGCGTGTCACTTGGCCTGGTTACCGCCGGCTGAACCAAACTAGTGAAGCTTCTAACTTTACCGTGGCTCAATTCATTGAAGGAAACCTGTGGTTGCCGTCCACCGGTGTCAAATACACTGCAGGATTGGGAGCTAATTAA 1527 47.28 MAKLTAKRLLQFWCFFILLFPMLSATSPPDLVKIECLTVPASQFSNSILSTIDVVQQVIAIFSPFTKLLGDLRLSTAVSDCLDLLDSSADQLSWSLSATQNPKAKDHSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIIKGLVSGSINQLTSQLYELLSMVKSIPNQPAADFPSWVKSEDRNLLQLNDFAADATVAADGTGDFTSVMDAVLAAPDNSIQRYVIYIKRGVYFENVEIKKKKWNLMMIGDGIDATTISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLKPSVNTTATYLGRPWKEYSRTIIMQSFMSDAIRPEGWLEWNADFALKTLFYAEFMNYGPGAGLAKRVTWPGYRRLNQTSEASNFTVAQFIEGNLWLPSTGVKYTAGLGAN 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 588442 590920 + CmPI595203_10g008540.1 Cmu10g0854 426384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g0854 508 Pfam Plant invertase/pectin methylesterase inhibitor 66 162 IPR006501 GO:0004857(InterPro)
Cmu10g0854 508 SUPERFAMILY Pectin lyase-like 192 504 IPR011050 -
Cmu10g0854 508 Gene3D - 188 505 IPR012334 -
Cmu10g0854 508 FunFam Pectinesterase 188 505 - -
Cmu10g0854 508 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 164 IPR035513 -
Cmu10g0854 508 Pfam Pectinesterase 194 491 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu10g0854 508 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 169 IPR035513 -
Cmu10g0854 508 SMART PMEI_2 27 166 IPR006501 GO:0004857(InterPro)
Cmu10g0854 508 CDD PMEI-like_4 14 167 - -
Cmu10g0854 508 PANTHER PECTINESTERASE 50 496 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2303 Cmu-Chr3:31705603 Cmu10g0854 Cmu-Chr10:588442 3.40E-131 dispersed
Cmu09g0533 Cmu-Chr9:4885348 Cmu10g0854 Cmu-Chr10:588442 1.60E-104 dispersed
Cmu09g0534 Cmu-Chr9:4907670 Cmu10g0854 Cmu-Chr10:588442 2.10E-128 dispersed
Cmu10g0854 Cmu-Chr10:588442 Cmu11g0015 Cmu-Chr11:603102 1.70E-100 dispersed
Cmu10g0854 Cmu-Chr10:588442 Cmu01g0042 Cmu-Chr1:347287 1.50E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g0854 K01051 - csv:116402691 907.516