Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g0856 ATGCGGTATTATTTGCAAGCGTCCCTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACGTTGCTGAACGGACAATCGGACGGGAGAAGAAGAGGAACGCTGACATATAGGCCATTTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCACGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGCGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAAGAGGTGCGTGTCCAATCTGATCCAGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTGCTACCATACTCCACTCGAATCTCAAGGTCACATCATAATTTTCAATTCGAAGATCAAGGAAAGCTAAGGGCAATAACCACATTAGCCATAGGAAAAAGAAATCTTCGACCTTCCTGA 1944 44.29 MRYYLQASLPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITLLNGQSDGRRRGTLTYRPFLGFLSGLHVRQITTKDRSSNSYFQTSYLFSRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQALDKPDAEPASDVKTGPDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVLPYSTRISRSHHNFQFEDQGKLRAITTLAIGKRNLRPS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 638635 646758 + CmPI595203_10g008560.1 Cmu10g0856 426386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g0856 647 SUPERFAMILY HSP20-like chaperones 537 610 IPR008978 -
Cmu10g0856 647 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 174 610 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Cmu10g0856 647 SUPERFAMILY ARID-like 326 433 IPR036431 GO:0003677(InterPro)
Cmu10g0856 647 MobiDBLite consensus disorder prediction 430 447 - -
Cmu10g0856 647 MobiDBLite consensus disorder prediction 1 33 - -
Cmu10g0856 647 FunFam AT-rich interactive domain-containing protein 3 332 431 - -
Cmu10g0856 647 SMART bright_3 333 424 IPR001606 GO:0003677(InterPro)
Cmu10g0856 647 CDD ACD_sHsps_p23-like 545 610 - -
Cmu10g0856 647 CDD ARID 337 419 - -
Cmu10g0856 647 MobiDBLite consensus disorder prediction 1 41 - -
Cmu10g0856 647 MobiDBLite consensus disorder prediction 207 227 - -
Cmu10g0856 647 SMART ARID_2 329 419 - -
Cmu10g0856 647 MobiDBLite consensus disorder prediction 430 453 - -
Cmu10g0856 647 ProSiteProfiles ARID domain profile. 332 423 IPR001606 GO:0003677(InterPro)
Cmu10g0856 647 MobiDBLite consensus disorder prediction 150 171 - -
Cmu10g0856 647 MobiDBLite consensus disorder prediction 207 283 - -
Cmu10g0856 647 Pfam ARID/BRIGHT DNA binding domain 335 419 IPR001606 GO:0003677(InterPro)
Cmu10g0856 647 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 526 637 IPR002068 -
Cmu10g0856 647 Gene3D - 500 611 IPR008978 -
Cmu10g0856 647 Gene3D - 332 430 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g0856 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g0782 . 64 415 ARID Transcription Factor Family AT1G04880 58.4 9.7e-108 387.5
Cmu10g0856 . 324 594 ARID Transcription Factor Family AT1G20910 61.4 1.5e-91 333.6
Cmu05g1576 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.4e-111 397.9
Cmu10g0856 . 303 616 ARID Transcription Factor Family AT1G76510 57.9 1.7e-101 366.7
Cmu07g1412 . 1 781 ARID Transcription Factor Family AT3G43240 58.9 3.4e-267 917.9
Cmu09g0129 . 92 853 ARID Transcription Factor Family AT3G43240 58.0 4.2e-257 884.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6917 PF01388 ARID 3.40E-16 CL0123 Cmu TR