Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g0856 | ATGCGGTATTATTTGCAAGCGTCCCTCCCAAGTTCCCAACCAAATAAAAGGCCATCGAATCGATTTTCCATAAACACTTGTGGAGGTCCAAGTTCTGATGGCGATCGCTCTCCTTCAAGGCCTGCGGCTCTTGCGCGAGAGAAAGTAGAAACAACGTCGAATTCAAATTTCAGAATCACGTTGCTGAACGGACAATCGGACGGGAGAAGAAGAGGAACGCTGACATATAGGCCATTTTTAGGGTTTCTTTCTGGGTTGCATGTTCGTCAAATTACCACCAAAGATCGAAGCAGCAATTCCTATTTCCAAACATCGTACTTGTTTTCCAGGATTCCCCCTTTGGAACTGGAGATGTGTGACGCGAAGGAGAAACACGAATCTGCACAAGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGTAAAAGGTGAGTTTCACGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGACTGCTTCACCTGAGACTCATGTACAGGAAGTTGTACTTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATGAAAATTCTGCGCATTTACTTCCCTTGGATCATGACCAAGCGTTGGACAAGCCTGATGCAGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGTTGCCCCCAAGGGATCCAGATGCTGCCTTTTCTAACTCTCCCCTGGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGATATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCGTCAACAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCCTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTCTATGGGGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGAGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGCACAACAGTTTCGTGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAATGCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAACGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTTCGTGAAGAGGTGCGTGTCCAATCTGATCCAGCAGGACGTTTGGTCATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCTGTGCTACCATACTCCACTCGAATCTCAAGGTCACATCATAATTTTCAATTCGAAGATCAAGGAAAGCTAAGGGCAATAACCACATTAGCCATAGGAAAAAGAAATCTTCGACCTTCCTGA | 1944 | 44.29 | MRYYLQASLPSSQPNKRPSNRFSINTCGGPSSDGDRSPSRPAALAREKVETTSNSNFRITLLNGQSDGRRRGTLTYRPFLGFLSGLHVRQITTKDRSSNSYFQTSYLFSRIPPLELEMCDAKEKHESAQDVSVALSEGNQVNVKGEFHDSLSVPAEATPNSCEKETASPETHVQEVVLPEDNLDKPTIPQQSNENSAHLLPLDHDQALDKPDAEPASDVKTGPDELPPRDPDAAFSNSPLETVQSSMDAKSEAFDMPETKTGSLDDASTASHDEPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNALSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVLPYSTRISRSHHNFQFEDQGKLRAITTLAIGKRNLRPS | 647 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 638635 | 646758 | + | CmPI595203_10g008560.1 | Cmu10g0856 | 426386 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g0856 | 647 | SUPERFAMILY | HSP20-like chaperones | 537 | 610 | IPR008978 | - | |
Cmu10g0856 | 647 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 174 | 610 | IPR045147 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER) | |
Cmu10g0856 | 647 | SUPERFAMILY | ARID-like | 326 | 433 | IPR036431 | GO:0003677(InterPro) | |
Cmu10g0856 | 647 | MobiDBLite | consensus disorder prediction | 430 | 447 | - | - | |
Cmu10g0856 | 647 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cmu10g0856 | 647 | FunFam | AT-rich interactive domain-containing protein 3 | 332 | 431 | - | - | |
Cmu10g0856 | 647 | SMART | bright_3 | 333 | 424 | IPR001606 | GO:0003677(InterPro) | |
Cmu10g0856 | 647 | CDD | ACD_sHsps_p23-like | 545 | 610 | - | - | |
Cmu10g0856 | 647 | CDD | ARID | 337 | 419 | - | - | |
Cmu10g0856 | 647 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cmu10g0856 | 647 | MobiDBLite | consensus disorder prediction | 207 | 227 | - | - | |
Cmu10g0856 | 647 | SMART | ARID_2 | 329 | 419 | - | - | |
Cmu10g0856 | 647 | MobiDBLite | consensus disorder prediction | 430 | 453 | - | - | |
Cmu10g0856 | 647 | ProSiteProfiles | ARID domain profile. | 332 | 423 | IPR001606 | GO:0003677(InterPro) | |
Cmu10g0856 | 647 | MobiDBLite | consensus disorder prediction | 150 | 171 | - | - | |
Cmu10g0856 | 647 | MobiDBLite | consensus disorder prediction | 207 | 283 | - | - | |
Cmu10g0856 | 647 | Pfam | ARID/BRIGHT DNA binding domain | 335 | 419 | IPR001606 | GO:0003677(InterPro) | |
Cmu10g0856 | 647 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 526 | 637 | IPR002068 | - | |
Cmu10g0856 | 647 | Gene3D | - | 500 | 611 | IPR008978 | - | |
Cmu10g0856 | 647 | Gene3D | - | 332 | 430 | IPR036431 | GO:0003677(InterPro) |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6917 | PF01388 | ARID | 3.40E-16 | CL0123 | Cmu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g0856 | - | - | - | 0.0 |