Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g0876 ATGCCAGAGGAAACTCAGACACATCAGCTCTCCTCCACCGCGATTATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTAGAGCGTATTTTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCCCCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGATGACATGTGCTTCCAAAGTCCCGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGGCAGGAAAGATTGAAACGCCAGAGACCTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGA 885 47.57 MPEETQTHQLSSTAIMMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFSQMSFYEAGNEQLAGKIETPETYSLYQQAEGYSMTERP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 847758 851722 + CmPI595203_10g008760.1 Cmu10g0876 426406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g0876 294 CDD homeodomain 115 177 IPR001356 GO:0003677(InterPro)
Cmu10g0876 294 Pfam Homeodomain 115 175 IPR001356 GO:0003677(InterPro)
Cmu10g0876 294 SUPERFAMILY Homeodomain-like 111 179 IPR009057 -
Cmu10g0876 294 MobiDBLite consensus disorder prediction 173 216 - -
Cmu10g0876 294 ProSiteProfiles 'Homeobox' domain profile. 111 176 IPR001356 GO:0003677(InterPro)
Cmu10g0876 294 MobiDBLite consensus disorder prediction 190 205 - -
Cmu10g0876 294 SMART HOX_1 113 180 IPR001356 GO:0003677(InterPro)
Cmu10g0876 294 Gene3D - 117 181 - -
Cmu10g0876 294 PANTHER WUSCHEL-RELATED HOMEOBOX 13 42 291 IPR044559 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g0876 Cmu-Chr10:847758 Cmu11g1866 Cmu-Chr11:30789522 2.30E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6919 PF00046 Homeodomain 9.70E-19 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g0876 - - - 0.0