Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g0888 ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCAGAGCCACCGACTCCTCCTCGTCCCATGTGAACCCGAGGCATCATCGCCAGAAGCTTGAAGTCTACAACGAAGTGCTCCGACGAATCCAGCAATCCAATTTCCATGAGGCCAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTTAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCAGAAGATGTCCTCACGCATAAGAGATTACTTCAATTGGCTCTGGACCCTGCTAACCGACCTGTATTTGAAATCCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGGGGAACCATCCACCTCCAACCTTTGGCTCTTCACCTAATCTTGAAGCCCTTCCATTTCAGGGCTGGAAGTACGGTGTTGAAGATAGGGACGGTGCCCCAAATGTGACACCCTGTTTCTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCCCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTATGAGGAAACTGAGGAGCTGAAAAGGGTATTAGAAAAAGAAATTTTAAATTTTAAGGAGCAGTGTTGGTCAGAAAAGCAGCCCAGTCCTGCTTTGGGTAAGGATAACCAGAATAGAGTTGAATCTTTCCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCCGGGTCATTTGGGGACCTGTATCGGGGCACATATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGAAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTCTGCATTGTGACAGAGTTTATGTCGAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTCCATCTCTACTTAAAGTAGCCATTAATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGACCATAAGGCAGACGTTTTCAGCTTTGGAATAGCCTTATGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCACTACAAGCAGCGGTTGGCGTGGTCCAGAAGAGACAGCGGCCTACGATACCAAAGAATGTCCATCCCGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCATGATCCAACCAAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATAGCTGAGCAGGTTGAAAACAACGGGGAAAATCAACGCAAGAAGGATAAATTATCTGGTGCGTTCTTCTCAGCCTTCAAGAGGGGACACCACTGA 1740 43.51 MPIEDDVESCGSRATDSSSSHVNPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLALDPANRPVFEIRSVQVYPSANENFINSSCLDSSMMEDAQSSLNYSNRQGNHPPPTFGSSPNLEALPFQGWKYGVEDRDGAPNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRVLEKEILNFKEQCWSEKQPSPALGKDNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAINISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRQRPTIPKNVHPVLAELLERCWRHDPTKRPNFSEILEILKQIAEQVENNGENQRKKDKLSGAFFSAFKRGHH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 942092 949100 - CmPI595203_10g008880.1 Cmu10g0888 426418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g0888 579 Coils Coil 543 563 - -
Cmu10g0888 579 CDD ACT_TyrKc 182 249 - -
Cmu10g0888 579 ProSiteProfiles ACT domain profile. 184 262 IPR002912 -
Cmu10g0888 579 SMART serkin_6 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g0888 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g0888 579 Gene3D Transferase(Phosphotransferase) domain 1 376 573 - -
Cmu10g0888 579 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524(InterPro)
Cmu10g0888 579 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g0888 579 SUPERFAMILY Protein kinase-like (PK-like) 275 546 IPR011009 -
Cmu10g0888 579 Coils Coil 234 254 - -
Cmu10g0888 579 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g0888 579 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g0888 579 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g0888 579 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g0888 579 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g0888 579 CDD STKc_MAP3K-like 303 546 - -
Cmu10g0888 579 SUPERFAMILY ACT-like 182 247 IPR045865 -
Cmu10g0888 579 FunFam Serine/threonine-protein kinase isoform 1 287 375 - -
Cmu10g0888 579 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Cmu10g0888 579 ProSiteProfiles Protein kinase domain profile. 297 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g0888 579 FunFam serine/threonine-protein kinase HT1 376 567 - -
Cmu10g0888 579 MobiDBLite consensus disorder prediction 1 27 - -
Cmu10g0888 579 PANTHER SERINE-THREONINE PROTEIN KINASE 141 550 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0404 Cmu-Chr2:3657743 Cmu10g0888 Cmu-Chr10:942092 5.00E-226 dispersed
Cmu02g1931 Cmu-Chr2:33191445 Cmu10g0888 Cmu-Chr10:942092 3.90E-40 dispersed
Cmu05g1580 Cmu-Chr5:25295748 Cmu10g0888 Cmu-Chr10:942092 3.60E-179 dispersed
Cmu05g1603 Cmu-Chr5:25763379 Cmu10g0888 Cmu-Chr10:942092 1.10E-45 dispersed
Cmu08g0636 Cmu-Chr8:18554239 Cmu10g0888 Cmu-Chr10:942092 1.30E-136 dispersed
Cmu10g0888 Cmu-Chr10:942092 Cmu11g1140 Cmu-Chr11:21537769 2.70E-70 dispersed
Cmu10g0888 Cmu-Chr10:942092 Cmu01g2100 Cmu-Chr1:33827041 1.80E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75822 PF07714 PK_Tyr_Ser-Thr 2.40E-75 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g0888 - - - 0.0