Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g0917 ATGGCTTCCATTTCTTCTTCTCTTCTTTCTCTCTTCCTCTTCTTCCCTTTCTTTTCAGGTGTAAATTCAGCAACTTTCACCATTTTAAATCAGTGTGGTTACACAGTGTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACCACCGGCTTCGTCCTGCAGACAGGACAGTCCAACGTCCTCACCATGCCCCCGGCATGGTCCGGCCGTATTTGGGGCCGCACTTATTGCTCCCAAGATGCCGCCGGCAGATTCTCCTGCGCCACTGCCGACTGCGGCTCCGGCGTCGTCGAATGCAATGGTGCTGGTGCTACCCCCCCCGCCACCCTTGCCGAGTTCACTCTCAATGGCGCCGGTGGGCTTGATTTCTTCGATGTCAGCCTTGTTGATGGATACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGAGGAAATTGCACGACCATTGGGTGTGCGACAGATTTAAATAGCGAGTGTCCACCGGAGCTAAGAGTGGTGGCAAGTGACGCCGGTGGGCGAGGCATAGCGTGTAAGAGCGCATGTGGCGCATTTGGTGACGCACAATATTGTTGTAGTGGCGAATATGGAAATCCAAACACTTGTCGACCGTCATCTTACTCACAGTTCTTCAAGTCCGCATGTCCTCAAGCTTATAGTTATGCCTACGATGACGGTACCAGTACATTCACTTGCACTTCTGCCAATTACCTCATCACTTTCTGTCCTTCTCTTTCAACTAGGTGCGTCATTAAACCTTGTGAAATCATCAAACGGGCAGTATCCTCGGGCAGTGGACATCTCAAGAGCCGAGCATTCGGGCAGACCGTTGACGTCAGTAGCCGTTATTTCCACCGTGACGGCAGCTCTAAGTCGGCGATTTTTTAG 903 52.38 MASISSSLLSLFLFFPFFSGVNSATFTILNQCGYTVWPGVLSGAGTSQLSTTGFVLQTGQSNVLTMPPAWSGRIWGRTYCSQDAAGRFSCATADCGSGVVECNGAGATPPATLAEFTLNGAGGLDFFDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPPELRVVASDAGGRGIACKSACGAFGDAQYCCSGEYGNPNTCRPSSYSQFFKSACPQAYSYAYDDGTSTFTCTSANYLITFCPSLSTRCVIKPCEIIKRAVSSGSGHLKSRAFGQTVDVSSRYFHRDGSSKSAIF 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1175841 1178568 - CmPI595203_10g009170.1 Cmu10g0917 426447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g0917 300 Pfam Thaumatin family 30 248 IPR001938 -
Cmu10g0917 300 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cmu10g0917 300 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Cmu10g0917 300 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cmu10g0917 300 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Cmu10g0917 300 FunFam THAUMATIN-LIKE PROTEIN 1 24 248 - -
Cmu10g0917 300 CDD TLP-PA 25 247 - -
Cmu10g0917 300 PANTHER OS03G0233200 PROTEIN 12 248 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cmu10g0917 300 PIRSF PR5 1 284 IPR001938 -
Cmu10g0917 300 SMART tha2 26 248 IPR001938 -
Cmu10g0917 300 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Cmu10g0917 300 Gene3D Thaumatin 24 248 IPR037176 -
Cmu10g0917 300 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Cmu10g0917 300 SUPERFAMILY Osmotin, thaumatin-like protein 24 249 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1976 Cmu-Chr1:33046859 Cmu10g0917 Cmu-Chr10:1175841 6.20E-93 dispersed
Cmu08g1366 Cmu-Chr8:25862574 Cmu10g0917 Cmu-Chr10:1175841 1.50E-91 dispersed
Cmu10g0917 Cmu-Chr10:1175841 Cmu10g2708 Cmu-Chr10:33782752 6.10E-66 dispersed
Cmu10g0916 Cmu-Chr10:1162837 Cmu10g0917 Cmu-Chr10:1175841 5.20E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g0917 - - - 0.0