Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g0976 ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACCCCGCCTCCTACTACTACCACACAGGAGCAGACTACAACCACAAGCGCTGGCACAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCACCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATTCCCCCGGGATCATATCCTTTTAGCCCCTTTACAATGCCTTCTCCGAATGGAATCACCGAGGCCTCTGGTAATACAGCAGGCAGTTTGGAGGGAGACGTTAAACCACCCGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACCGGGAAGAACAATGAGCTGGGTAAAGCATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCCAGACACTTTGGAAGTTGAAGTATCTCAGAATGGTAACTCAATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGCCATCCCATTGGCAACTGCTGGGGCCTCAGGAGTCGTTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCACTATCCCTGCTATCCGTGGAAAGGTTCAATCGACTCCAGTTGCTGGAGGACTAGTTACCGCTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGATTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAATTAGCACATCGAGCTGAAGCTTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGACTATGAACAGCTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTCGGGGAAGTTCCGGGAAACGAAGAAGTAAGGGCCGGCAGGAAAGGCCAGCGTTTAAGTAACGAAACCACACAACCTACAGAGTCAGAGGTTGTGCAAGTTGGTAACAAGAATTGA 1218 47.7 MSGSEMEKPPKDKETKTPPPTTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFTMPSPNGITEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKASGTSANGAYSKSAESASEGTSEGSDANSQNESQPKLGSRPDTLEVEVSQNGNSMHGTQNGGSNTQAMAAIPLATAGASGVVPGPTTNLNIGMDYWGASSTIPAIRGKVQSTPVAGGLVTAGSRDSIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSDYEQLLSENASLKERLGEVPGNEEVRAGRKGQRLSNETTQPTESEVVQVGNKN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1687103 1691970 + CmPI595203_10g009760.1 Cmu10g0976 426506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g0976 405 MobiDBLite consensus disorder prediction 302 324 - -
Cmu10g0976 405 MobiDBLite consensus disorder prediction 369 383 - -
Cmu10g0976 405 Pfam G-box binding protein MFMR 4 98 IPR012900 -
Cmu10g0976 405 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g0976 405 MobiDBLite consensus disorder prediction 17 42 - -
Cmu10g0976 405 MobiDBLite consensus disorder prediction 120 205 - -
Cmu10g0976 405 MobiDBLite consensus disorder prediction 363 405 - -
Cmu10g0976 405 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g0976 405 MobiDBLite consensus disorder prediction 384 405 - -
Cmu10g0976 405 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g0976 405 MobiDBLite consensus disorder prediction 1 44 - -
Cmu10g0976 405 MobiDBLite consensus disorder prediction 148 205 - -
Cmu10g0976 405 MobiDBLite consensus disorder prediction 1 15 - -
Cmu10g0976 405 Coils Coil 319 367 - -
Cmu10g0976 405 PANTHER G-BOX-BINDING FACTOR 3-RELATED 23 392 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Cmu10g0976 405 SMART brlzneu 299 363 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g0976 405 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g0976 405 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g0976 405 Gene3D - 302 356 - -
Cmu10g0976 405 Pfam Disordered region downstream of MFMR 137 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0121 Cmu-Chr5:1101480 Cmu10g0976 Cmu-Chr10:1687103 5.90E-23 dispersed
Cmu01g1870 Cmu-Chr1:32284212 Cmu10g0976 Cmu-Chr10:1687103 2.40E-32 transposed
Cmu10g0976 Cmu-Chr10:1687103 Cmu09g1108 Cmu-Chr9:11323078 8.40E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6924 PF16596 MFMR_assoc 5.90E-48 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g0976 K09060 - csv:101206627 711.835