Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g0990 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGCCGAGAGAAGAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGACGATAGCTGCAACAGCACTGGCTCGGATGCCCCTTCTTCAGTAGCACAAGACCGGATGATCATTGTTGGGAATCAGCTCCCTATTCGAGCGAATCGAGATGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGACTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGATGATGTTGCACAAATTCTTTTGGACCGATTCAAGTGTGTCCCGACGTTCCTTCCTCCCGAGCTTTTTACTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCACTGTTTCACTATATGCTTCCCCTGTCACCGGATCTTGGTGGCAGATTTGATCGGTCTCTTTGGCAAGCATATCTTTCGGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGACGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCATCTGAGATTTATCGGACCCTTCCCGTTAGAGACGAACTTCTTCGGGCACTATTGAACTCTGACCTTATTGGCTTCCACACGTTTGATTATGCTAGGCATTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATCGGGCTTGAATACTATGGTCGTACTGTGAGCATCAAGATTCTTCCTGTCGGTATTCATATAGGCCAGCTCCAAAATGTTTTGAATCTCCCCGAGACTGTATCCAAAGTCGCAGAATTGCAAGAGCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGATATGGACATATTTAAGGGGATCAGCCTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACATCCTGAGAGATGGGGCAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGCAGAGGGAAAGATGTGCAGGAGGTTGTGGCTGAAACCACAGCGACAGTGGATAGAATTAATACAACATTTAGAAGGCCAGGATATGAGCCTGTGGTTTTGATAAACACTCCCTTGCAGTTTTACGAGCGAATTGCTTACTATGCAATTGCTGAGTGCTGCCTTGTTACTGCAGTGAGAGATGGGATGAATCTTATACCTTATGAGTATATTATATGTCGGCAAGGCAATGAGAAGCTTGACGATGTTCTCGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAGGCAATGGATTCTGCCCTGGTAATCCCTGAGGCAGAAAAGCAATTGCGACATGAAAAGCATTATAGGTATGTTAGTACGCATGATGTTGCATATTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCCTGTAGAGACCATTCAATGAGGAGGTGCTGGGGCATAGGTTTTGGTTTAGGATTTCGAGTTATTGCCCTGGATCCAGATTTTAGGAAGCTTTCAGTTGATCATATTGTTTCAGTGTATAAGAGAACCTGCCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCTGGATCAATTAGCATGAATCCAACTTCAGAAGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAATCATACTGCAGACTGGGAGACATGTGTAGCTGTGACGGATTTTGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGATGGCTCTACAATCGAAACTAAAGAGAGTGCGCTTGTTTGGAACTACCTTTACGCAGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGCGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAGGGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCAGACGAGGACATGTTCGAGGTGATAATGAATGCAAAAGCCACCCTTTCTCCCGGTGCCGAAGTATTCGGTTGTACCGTTGGCCAGAAACCAAGCAAGGCCAGGTATTACTTAGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTTACCCATGCGTCCGAGCATGCGACTAGAGCTGCTCTGCAGACGACAGCTCGTAGAGTGGATAAACGGGAACGCACACCTCCAGCAACGAGCAGCGCGCGCGATCAACCTCCTTGCGGGACGGCGTGCGACAAGTCACGAGCGGCGTCGAATTCTCCGGCGGATCTAGTCAAGCAGCAGCGTGCGATTCTCTCGACGCCACAACCTGCATCCACGACGACGGACAGATTGTCGACGGCGCGAACACCTCCTTGCCCTTTCGGAATTGTGCTTTTGCTTCCCTTGATGGATTCTAGTGTTACTATCGCGACTGTAATTCTCAGTATCAGCTTGATTTTGAGCCGTGTTCTTTACGTTATATATTGGAGTGGTAGACCACTTCGAAACAAAAGCTTGGGACCTGTTAGTACCCTCATTGTTTTAGGCTCAGGAGGTCACACGGCGGAGATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGTTTTCTCCAAGATTCTACATTGCTGCTGCTACTGATAACATGAGTCTTCAAAAAGCTCGTACGTATGAGAACCAACTGGCTGATAAGACTGGGGCTGAGGTAGACAAGATTGCACAGTTTATGCAGATCTACAGAAGTAGGGAAGTAGGACAATCATATTTCACTTCTGTTTGGACAACTTTAATTGCCACATTGCATGCACTCTGGCTAATGCTCAAAATTAGACCTCAAGTGATTCTCTGCAATGGCCCTGGTACTTGTATCCCACTATGCGTAATTGCATTCATATTCAAGGTTCTGGGAATTAGATGGTCTTCAATTTTTTATGTGGAAAGCATTGCAAGAGTGAAGAGATTATCATTAAGTGGCTTGATTTTATACAAGTTATACATGGCTGATCAGTTCTTTGTGCAATGGCCACAACTTCAAAGGATGTATCCCCGCGCTCACTACGTCGGTTGTCTCATGTAG 3468 45.18 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRANRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQILLDRFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQERFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVDRINTTFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPDFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCVAVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMRERGMLPDFVLCIGDDRSDEDMFEVIMNAKATLSPGAEVFGCTVGQKPSKARYYLEDTHEILRMLQGLTHASEHATRAALQTTARRVDKRERTPPATSSARDQPPCGTACDKSRAASNSPADLVKQQRAILSTPQPASTTTDRLSTARTPPCPFGIVLLLPLMDSSVTIATVILSISLILSRVLYVIYWSGRPLRNKSLGPVSTLIVLGSGGHTAEMLNVLSVLQKDLFSPRFYIAAATDNMSLQKARTYENQLADKTGAEVDKIAQFMQIYRSREVGQSYFTSVWTTLIATLHALWLMLKIRPQVILCNGPGTCIPLCVIAFIFKVLGIRWSSIFYVESIARVKRLSLSGLILYKLYMADQFFVQWPQLQRMYPRAHYVGCLM 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1896051 1905828 + CmPI595203_10g009900.1 Cmu10g0990 426520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g0990 1155 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0005992(InterPro)
Cmu10g0990 1155 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cmu10g0990 1155 Pfam Oligosaccharide biosynthesis protein Alg14 like 976 1154 IPR013969 GO:0006488(InterPro)
Cmu10g0990 1155 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 314 - -
Cmu10g0990 1155 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Cmu10g0990 1155 NCBIfam HAD-IIB family hydrolase 596 798 IPR006379 -
Cmu10g0990 1155 NCBIfam trehalose-phosphatase 593 840 IPR003337 GO:0005992(InterPro)
Cmu10g0990 1155 SUPERFAMILY HAD-like 594 839 IPR036412 -
Cmu10g0990 1155 FunFam Alpha,alpha-trehalose-phosphate synthase 316 531 - -
Cmu10g0990 1155 MobiDBLite consensus disorder prediction 844 889 - -
Cmu10g0990 1155 CDD GT20_TPS 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cmu10g0990 1155 MobiDBLite consensus disorder prediction 898 917 - -
Cmu10g0990 1155 Gene3D - 593 710 IPR023214 -
Cmu10g0990 1155 Gene3D - 723 854 IPR023214 -
Cmu10g0990 1155 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 842 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Cmu10g0990 1155 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Cmu10g0990 1155 Gene3D Glycogen Phosphorylase B; 975 1155 - -
Cmu10g0990 1155 FunFam UDP-N-acetylglucosamine transferase subunit ALG14 isogeny 975 1155 - -
Cmu10g0990 1155 Gene3D Glycogen Phosphorylase B; 56 314 - -
Cmu10g0990 1155 FunFam Trehalose-6-phosphate synthase 2 677 756 - -
Cmu10g0990 1155 CDD HAD_TPP 595 831 - -
Cmu10g0990 1155 Gene3D Glycogen Phosphorylase B; 315 531 - -
Cmu10g0990 1155 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 852 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1320 Cmu-Chr3:8319886 Cmu10g0990 Cmu-Chr10:1896051 6.90E-124 dispersed
Cmu05g2572 Cmu-Chr5:34441531 Cmu10g0990 Cmu-Chr10:1896051 0.00E+00 dispersed
Cmu06g1737 Cmu-Chr6:28331807 Cmu10g0990 Cmu-Chr10:1896051 0.00E+00 dispersed
Cmu07g0305 Cmu-Chr7:3018889 Cmu10g0990 Cmu-Chr10:1896051 0.00E+00 dispersed
Cmu10g0990 Cmu-Chr10:1896051 Cmu11g1723 Cmu-Chr11:29331739 4.10E-126 dispersed
Cmu10g0990 Cmu-Chr10:1896051 Cmu01g2336 Cmu-Chr1:35504962 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g0990 K16055 - csv:101207192 1699.49