Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g1010 | ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAAAACGCGTCGGTGATGGACGCTTTCATGAACTCCGATCTGTCCTCTTACTGGGCTCCATCTGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCGCCTCAGTCCTCCGCCTCCACCTCCACTCCCCCACCGGACCCGCCCAAGTCCCTGCCTGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGATGGCGCTAGGGAGAGTTGGACTTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGTGCGTCGGTTTTAGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCGAAAATGGTGTCGTCGGCGGCAGAGCAGGCTCATCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTAATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCTTTTGATAATGGAGTTTGGTTACCGAGTCAGGCGTTTTACAACTCGACGCCGATTTGGGTTTCTGGCGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGGGCCAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCAAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCGTCGAGTACTATCGAGATGAAGGATTCCATTACCACCACCGTCCCTTCCGGCAACGTCCCGGCAAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATATCAGCGCGATCCAACAACCATCCCATCAAAAACAAAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCTCAAAGAACACCACCGCGGCCGCAACAACCACCACCGCCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTCGGCAACGGAAACCTCTTCTCTAGCCATTCACAGTATGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCCGGTAAGGTAAAATCCGGGGACTCAGACCACTCAGATCTCGAAGCATCGGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCATGTAGAAGCAGAGAGACAACGGCGAGAGAAGTTGAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCACTACTGGGAGACGCGGTTTCTTACATCAACGAGCTCAAATCAAAGCTCCAAATAGCGGAAACGGAGAAAACAGAGATGGGAAAACATTTAGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATTTCGGGAATTACCCGAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATCGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAGCAAGAAAAATCATCCGGCGGCAAGGCTGATGGCGGCGTTTAAGGATTTAGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCAACGGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTTAAAATGGCTCTCGTCGCCCGAGTCGGGGGCGGCGGCGGCAGCAGCCATGGAATGATGTAA | 1971 | 50.13 | MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFDNGVWLPSQAFYNSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAADEGENDPSSMWISEPSSTIEMKDSITTTVPSGNVPAKPIHSENPSSSSLTENISAIQQPSHQKQSQSFLNFSDYGFESNPSKNTTAAATTTTATPSFKPESGGMLNFGNGNLFSSHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAETEKTEMGKHLELLKKEMGGKDFGNYPNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSSKKNHPAARLMAAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGSSHGMM | 656 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2101974 | 2103944 | + | CmPI595203_10g010100.1 | Cmu10g1010 | 426540 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g1010 | 656 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 469 | 518 | IPR011598 | GO:0046983(InterPro) | |
Cmu10g1010 | 656 | MobiDBLite | consensus disorder prediction | 377 | 396 | - | - | |
Cmu10g1010 | 656 | MobiDBLite | consensus disorder prediction | 296 | 319 | - | - | |
Cmu10g1010 | 656 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 253 | IPR025610 | - | |
Cmu10g1010 | 656 | Gene3D | - | 468 | 545 | IPR036638 | GO:0046983(InterPro) | |
Cmu10g1010 | 656 | FunFam | Transcription factor bHLH13 | 462 | 536 | - | - | |
Cmu10g1010 | 656 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 472 | 539 | IPR036638 | GO:0046983(InterPro) | |
Cmu10g1010 | 656 | PANTHER | MYC | 56 | 644 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro) | |
Cmu10g1010 | 656 | Coils | Coil | 515 | 542 | - | - | |
Cmu10g1010 | 656 | Pfam | Helix-loop-helix DNA-binding domain | 473 | 519 | IPR011598 | GO:0046983(InterPro) | |
Cmu10g1010 | 656 | MobiDBLite | consensus disorder prediction | 350 | 410 | - | - | |
Cmu10g1010 | 656 | SMART | finulus | 475 | 524 | IPR011598 | GO:0046983(InterPro) | |
Cmu10g1010 | 656 | MobiDBLite | consensus disorder prediction | 36 | 67 | - | - | |
Cmu10g1010 | 656 | MobiDBLite | consensus disorder prediction | 50 | 65 | - | - | |
Cmu10g1010 | 656 | MobiDBLite | consensus disorder prediction | 350 | 369 | - | - | |
Cmu10g1010 | 656 | CDD | bHLH_AtAIB_like | 466 | 542 | - | - | |
Cmu10g1010 | 656 | MobiDBLite | consensus disorder prediction | 444 | 479 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu10g1010 | Cmu-Chr10:2101974 | Cmu11g1182 | Cmu-Chr11:22833513 | 3.30E-11 | dispersed | |
Cmu05g0083 | Cmu-Chr5:824216 | Cmu10g1010 | Cmu-Chr10:2101974 | 1.10E-61 | transposed | |
Cmu07g0086 | Cmu-Chr7:727037 | Cmu10g1010 | Cmu-Chr10:2101974 | 2.40E-19 | transposed | |
Cmu07g0134 | Cmu-Chr7:1282181 | Cmu10g1010 | Cmu-Chr10:2101974 | 1.80E-41 | transposed | |
Cmu10g0928 | Cmu-Chr10:1241543 | Cmu10g1010 | Cmu-Chr10:2101974 | 2.10E-41 | transposed | |
Cmu11g0941 | Cmu-Chr11:12925613 | Cmu10g1010 | Cmu-Chr10:2101974 | 4.30E-06 | transposed | |
Cmu11g1040 | Cmu-Chr11:18304111 | Cmu10g1010 | Cmu-Chr10:2101974 | 6.20E-06 | transposed | |
Cmu10g1010 | Cmu-Chr10:2101974 | Cmu09g1144 | Cmu-Chr9:12264305 | 4.00E-211 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6929 | PF14215 | bHLH-MYC_N | 9.00E-52 | CL0161 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g1010 | K13422 | - | csv:101205372 | 1103.58 |