Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1010 ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAAAACGCGTCGGTGATGGACGCTTTCATGAACTCCGATCTGTCCTCTTACTGGGCTCCATCTGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCGCCTCAGTCCTCCGCCTCCACCTCCACTCCCCCACCGGACCCGCCCAAGTCCCTGCCTGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGATGGCGCTAGGGAGAGTTGGACTTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGTGCGTCGGTTTTAGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCGAAAATGGTGTCGTCGGCGGCAGAGCAGGCTCATCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTAATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCTTTTGATAATGGAGTTTGGTTACCGAGTCAGGCGTTTTACAACTCGACGCCGATTTGGGTTTCTGGCGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGGGCCAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCAAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCGTCGAGTACTATCGAGATGAAGGATTCCATTACCACCACCGTCCCTTCCGGCAACGTCCCGGCAAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATATCAGCGCGATCCAACAACCATCCCATCAAAAACAAAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCTCAAAGAACACCACCGCGGCCGCAACAACCACCACCGCCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTCGGCAACGGAAACCTCTTCTCTAGCCATTCACAGTATGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCCGGTAAGGTAAAATCCGGGGACTCAGACCACTCAGATCTCGAAGCATCGGTGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCATGTAGAAGCAGAGAGACAACGGCGAGAGAAGTTGAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCACTACTGGGAGACGCGGTTTCTTACATCAACGAGCTCAAATCAAAGCTCCAAATAGCGGAAACGGAGAAAACAGAGATGGGAAAACATTTAGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATTTCGGGAATTACCCGAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATCGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAGCAAGAAAAATCATCCGGCGGCAAGGCTGATGGCGGCGTTTAAGGATTTAGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCAACGGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTTAAAATGGCTCTCGTCGCCCGAGTCGGGGGCGGCGGCGGCAGCAGCCATGGAATGATGTAA 1971 50.13 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFDNGVWLPSQAFYNSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAADEGENDPSSMWISEPSSTIEMKDSITTTVPSGNVPAKPIHSENPSSSSLTENISAIQQPSHQKQSQSFLNFSDYGFESNPSKNTTAAATTTTATPSFKPESGGMLNFGNGNLFSSHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAETEKTEMGKHLELLKKEMGGKDFGNYPNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSSKKNHPAARLMAAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGSSHGMM 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2101974 2103944 + CmPI595203_10g010100.1 Cmu10g1010 426540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1010 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983(InterPro)
Cmu10g1010 656 MobiDBLite consensus disorder prediction 377 396 - -
Cmu10g1010 656 MobiDBLite consensus disorder prediction 296 319 - -
Cmu10g1010 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Cmu10g1010 656 Gene3D - 468 545 IPR036638 GO:0046983(InterPro)
Cmu10g1010 656 FunFam Transcription factor bHLH13 462 536 - -
Cmu10g1010 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 539 IPR036638 GO:0046983(InterPro)
Cmu10g1010 656 PANTHER MYC 56 644 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Cmu10g1010 656 Coils Coil 515 542 - -
Cmu10g1010 656 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983(InterPro)
Cmu10g1010 656 MobiDBLite consensus disorder prediction 350 410 - -
Cmu10g1010 656 SMART finulus 475 524 IPR011598 GO:0046983(InterPro)
Cmu10g1010 656 MobiDBLite consensus disorder prediction 36 67 - -
Cmu10g1010 656 MobiDBLite consensus disorder prediction 50 65 - -
Cmu10g1010 656 MobiDBLite consensus disorder prediction 350 369 - -
Cmu10g1010 656 CDD bHLH_AtAIB_like 466 542 - -
Cmu10g1010 656 MobiDBLite consensus disorder prediction 444 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1010 Cmu-Chr10:2101974 Cmu11g1182 Cmu-Chr11:22833513 3.30E-11 dispersed
Cmu05g0083 Cmu-Chr5:824216 Cmu10g1010 Cmu-Chr10:2101974 1.10E-61 transposed
Cmu07g0086 Cmu-Chr7:727037 Cmu10g1010 Cmu-Chr10:2101974 2.40E-19 transposed
Cmu07g0134 Cmu-Chr7:1282181 Cmu10g1010 Cmu-Chr10:2101974 1.80E-41 transposed
Cmu10g0928 Cmu-Chr10:1241543 Cmu10g1010 Cmu-Chr10:2101974 2.10E-41 transposed
Cmu11g0941 Cmu-Chr11:12925613 Cmu10g1010 Cmu-Chr10:2101974 4.30E-06 transposed
Cmu11g1040 Cmu-Chr11:18304111 Cmu10g1010 Cmu-Chr10:2101974 6.20E-06 transposed
Cmu10g1010 Cmu-Chr10:2101974 Cmu09g1144 Cmu-Chr9:12264305 4.00E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6929 PF14215 bHLH-MYC_N 9.00E-52 CL0161 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1010 K13422 - csv:101205372 1103.58