Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1021 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCAGCCACAATCCACTCCCCCCAACAGGATGATCCCCAACGCTTCTTATTCCACTAATTTGCCCAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAGATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCCTCTAAGCCCTCCGAATCTCCCAATGCGGCTTCTTATGATGGATCGCAGTCTGAATTGCGCACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCCCCTGATGGGAACATCGCCTTGGGTTTATCCCCAACCCCCATCACTTCTTCCGCCCTTCCTGGCGATTCCGCCGGCATGAACTCCCCGGATCCTCGCCCTAAGAAGAACAGGGGACGGCCGCCCGGTACAGGGAAGAGGCAGATGGATGCTTTGGGGACTGGTGGTGTTGGCTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGATATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGTGCTGTTTGCAATGTTACACTTCAACCTGCAATGTCAGCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTCTTGATTTCTGACAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACAGCAGCATCGACAGTTCAGGTTATAGTCGGTAGCTTTCTTGTGGATGGGAAAAAGCTAGGAGCGAGTATACAGAAATCTGGGCCATCTTCTACATCTCCCAATATGTTGAACTTTAATACACCCGTGGCAACAGGCTGCCCATCTGAAGGTGCATCAAATAATTCATCCGATGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATCTACACCAATGCCAACCAACCAATGCATAATATGCAGATGTATCAACTATGGGCGCTACTTAGGTTCCTGAATGTAGCTGCATTTAGGGGTTCCTTCATCAAGTCCTTCGATGTGCCATGTATTTCTTCTATTACTTTCTGTCCTAGCACTTTCCTCATTACCATCTCATTGGATTCTTTTCCAATTTCAATGTTTCCCAGCCATGATTTGTTCACTCATTTCCCTCCTAAACCCACATTTGCCAGAACACCACCTAAGCCATCTCCCTGTTTTCCCAAGCTCATCCTCTTTGCACCATCGAAACCCTAA 1323 47.92 MDSRERSMPSVHQHQPQSTPPNRMIPNASYSTNLPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSALPGDSAGMNSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPAMSAGSVSYEGRYEIISLSGSFLISDNNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFNTPVATGCPSEGASNNSSDDNGGSPLSRGPGIYTNANQPMHNMQMYQLWALLRFLNVAAFRGSFIKSFDVPCISSITFCPSTFLITISLDSFPISMFPSHDLFTHFPPKPTFARTPPKPSPCFPKLILFAPSKP 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2167894 2176750 + CmPI595203_10g010210.1 Cmu10g1021 426551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1021 440 MobiDBLite consensus disorder prediction 10 92 - -
Cmu10g1021 440 MobiDBLite consensus disorder prediction 118 132 - -
Cmu10g1021 440 SMART AT_hook_2 143 155 IPR017956 GO:0003677(InterPro)
Cmu10g1021 440 SMART AT_hook_2 99 111 IPR017956 GO:0003677(InterPro)
Cmu10g1021 440 MobiDBLite consensus disorder prediction 315 340 - -
Cmu10g1021 440 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 280 IPR005175 -
Cmu10g1021 440 MobiDBLite consensus disorder prediction 1 161 - -
Cmu10g1021 440 Gene3D - 169 295 - -
Cmu10g1021 440 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 281 - -
Cmu10g1021 440 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 348 IPR039605 GO:0003680(InterPro)
Cmu10g1021 440 CDD DUF296 168 280 IPR005175 -
Cmu10g1021 440 ProSiteProfiles PPC domain profile profile. 163 302 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1021 Cmu-Chr10:2167894 Cmu11g1886 Cmu-Chr11:30893192 1.20E-46 dispersed
Cmu10g1021 Cmu-Chr10:2167894 Cmu10g1022 Cmu-Chr10:2183337 1.70E-11 tandem
Cmu02g2169 Cmu-Chr2:35320575 Cmu10g1021 Cmu-Chr10:2167894 1.60E-18 transposed
Cmu08g0870 Cmu-Chr8:20983940 Cmu10g1021 Cmu-Chr10:2167894 6.30E-62 transposed
Cmu10g1021 Cmu-Chr10:2167894 Cmu05g0282 Cmu-Chr5:2403443 6.80E-13 wgd
Cmu10g1021 Cmu-Chr10:2167894 Cmu09g1154 Cmu-Chr9:12445836 8.10E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1021 - - - 0.0