Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1022 ATGGCTGGATTGGATTTAGGGAGTCGATATCTAACTCACCTTCAAACGCCAGTAGACGATCTAGTAAATCGTAGTGGTCATTTCTCTTCCGGTGACCACCAAGACGATGACGATCCCCATCAAGCCCTTGGTGGCCCGGGGGACGTCGTTGGCCGCCGCCCTCGCGGACGGCCACCCGGTTCGAAAAACAAGCCAAAGCCACCAGTAATCATCACCCGTGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTCGGGAGTGGCTGCGACGTTTTCGATTGCGTCGCCTCCTATGCCCGCCGGCGACAGCGTGGGATCTGTATTTTGAGTGGCAGCGGTAACGTCACCAACGTTGGCCTCCGCCAGCCAGCGGCGGCAGGGGCGGTGCTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGCTTTCTGGGTCGTTTCTGCCGCCGCCCGCTCCACCTGGCGCCACAAGTTTGACGATATTTTTAGCCGGAGGACAGGGGCAGGTTGTGGGAGGGACGGTGGCCGGGGAATTAACGGCGGCCGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAGAGATTGCCACTGGATGAGGAGGATCAGCAGCAAGCTCCGGCAGGCGGCAGCGGCGGAAGCAGCGGCGGAGTGGGTAATAACAACAATAATCCATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAATTTGCCACTGCATATGCAAAATGTTCAACTTCCACCCTTTTGA 765 55.69 MAGLDLGSRYLTHLQTPVDDLVNRSGHFSSGDHQDDDDPHQALGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPAGGSGGSSGGVGNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2183337 2184101 - CmPI595203_10g010220.1 Cmu10g1022 426552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1022 254 Gene3D - 79 208 - -
Cmu10g1022 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 222 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu10g1022 254 MobiDBLite consensus disorder prediction 210 236 - -
Cmu10g1022 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 192 IPR005175 -
Cmu10g1022 254 ProSiteProfiles PPC domain profile profile. 76 212 IPR005175 -
Cmu10g1022 254 FunFam AT-hook motif nuclear-localized protein 79 206 - -
Cmu10g1022 254 CDD DUF296 80 191 IPR005175 -
Cmu10g1022 254 MobiDBLite consensus disorder prediction 205 236 - -
Cmu10g1022 254 PIRSF ESCAROLA 8 250 IPR014476 GO:0003680(InterPro)
Cmu10g1022 254 MobiDBLite consensus disorder prediction 22 70 - -
Cmu10g1022 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0282 Cmu-Chr5:2403443 Cmu10g1022 Cmu-Chr10:2183337 3.50E-78 dispersed
Cmu06g0068 Cmu-Chr6:641386 Cmu10g1022 Cmu-Chr10:2183337 4.50E-78 dispersed
Cmu10g1022 Cmu-Chr10:2183337 Cmu11g0675 Cmu-Chr11:7436826 4.90E-48 dispersed
Cmu10g1021 Cmu-Chr10:2167894 Cmu10g1022 Cmu-Chr10:2183337 1.70E-11 tandem
Cmu10g1022 Cmu-Chr10:2183337 Cmu09g1156 Cmu-Chr9:12476026 1.30E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1022 - - - 0.0