Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1058 ATGGAGAATCGGTATGAGCCACTGAAGGACCTTGGCTCTGGAAATTTTGGAGTTGCTAGGCTCGTTAGAGACAAGAAGACAAACGAACTTGTTGCGGTCAAGTACATTGAGAGAGGGAAGAAGGTAAATAACTCAACAGTTGGATTTAATGCTGTAAATTACTTAAACGATGGTGGGATTGAGAGTTTTGGGTCTGATTCTTTGTCAGCTGATGGGATTTCACTTATCGATGAGAAAGTTCAGAGGGAAATCATTAATCATCGATCGTTGCGGCATCCGAACATTATCAGATTCAAGGAGGTCTTCTTAACCCCAACTCATTTAGCCATTGTCATGGAATATGCAGCTGGTGGGGAACTCTTTGGAAGAATATGCAGTGCTGGTCGATTTAGCGAAGATGAGGCAAGATTTTTCTTCCAGCAGCTAATATCCGGAGTCAGCTACTGCCATTCCATGCAAATTTGTCACAGGGATCTGAAATTGGAAAACACACTCTTGGATGGAAGTCCTACACCACAACTTAAGATATGTGACTTTGGTTACTCCAAGTCCGCTTTATTACACTCACAACCGAAATCGACTGTTGGGACACCGGCATATATTGCACCAGAGGTTCTATCGCGGAAGGAGTATGATGGCAAGATTTCAGATGTTTGGTCATGTGGAGTGACATTGTATGTAATGTTGGTTGGAGCATACCCGTTCGAGGATCCCGAAGATCCGAGAAATTTCCGTAAGACAATAGCAAGAATATTGAGTGTTCAATACTCAATACCCGATTATGTACGTGTGTCCATAGAGTGTCGCAACCTTCTTTCTCGCATATTCGTTGCCAACCCCGCAAAGAGGATCACCATCCAAGAGATAAAACAGCTTCCATGGTTTTTCAAGAACTTGCCAAAGGAGCTCATTGAGATTGAGAAAACTGACTTCAAACAACAAGAACACAACCAACCATTGCAAAGCGTGGAGGAAATCATGCAGATTGTTCAGGAAGCAATGACACCAGGAGAAGCATCTAAAGTCGGGGACCAAGCGTTGGCTGGAGGATCGGGGCTCGATGATCTGGATGCCGATATAGATTCTGAAGTTGATGTCAGTGGTGATTATGTAACTGCTGTTTGA 1125 43.56 MENRYEPLKDLGSGNFGVARLVRDKKTNELVAVKYIERGKKVNNSTVGFNAVNYLNDGGIESFGSDSLSADGISLIDEKVQREIINHRSLRHPNIIRFKEVFLTPTHLAIVMEYAAGGELFGRICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPTPQLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIARILSVQYSIPDYVRVSIECRNLLSRIFVANPAKRITIQEIKQLPWFFKNLPKELIEIEKTDFKQQEHNQPLQSVEEIMQIVQEAMTPGEASKVGDQALAGGSGLDDLDADIDSEVDVSGDYVTAV 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2726444 2729830 + CmPI595203_10g010580.1 Cmu10g1058 426588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1058 374 CDD STKc_SnRK2 4 294 - -
Cmu10g1058 374 Gene3D Phosphorylase Kinase; domain 1 68 114 - -
Cmu10g1058 374 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 3 301 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cmu10g1058 374 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524(InterPro)
Cmu10g1058 374 Gene3D Transferase(Phosphotransferase) domain 1 115 302 - -
Cmu10g1058 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g1058 374 Pfam Protein kinase domain 77 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1058 374 SMART serkin_6 5 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g1058 374 FunFam Serine/threonine-protein kinase SRK2E 115 303 - -
Cmu10g1058 374 SUPERFAMILY Protein kinase-like (PK-like) 3 323 IPR011009 -
Cmu10g1058 374 Gene3D Phosphorylase Kinase; domain 1 1 56 - -
Cmu10g1058 374 ProSiteProfiles Protein kinase domain profile. 5 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1058 K14498 - - csv:101207431 619.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1689 Cmu-Chr9:32750758 Cmu10g1058 Cmu-Chr10:2726444 4.90E-132 dispersed
Cmu10g1058 Cmu-Chr10:2726444 Cmu10g2059 Cmu-Chr10:26455886 1.10E-48 dispersed
Cmu10g1058 Cmu-Chr10:2726444 Cmu02g0601 Cmu-Chr2:5813463 1.70E-134 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g558 Blo02g01010 . . Bda08g00611 Bpe05g00545 . . . Cmo06g00845 Cmo16g01150 . . . . . Cpe14g00910 . Bhi11g00087 . . . . Mch10g1603 . Cla10g00206 Cam10g0212 Cec10g0217 Cco10g0218 Clacu10g0215 Cmu10g1058 Cre10g0466 . . . . Lsi07g01247 . . Cme06g02518 . . . . . . Bma05g00737 . . . . Cma06g00823 Cma16g01101 . Car16g01042 . . Bhi05g00574 Tan07g1902 . Lac11g2344 Hepe06g1246 . . . . . . . . . . Csa03g00222 Chy06g02099 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75826 PF00069 Pkinase 1.00E-61 CL0016 Cmu PK