Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1068 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGCCCTCCTGATAAGCCAGTATTATGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAACTCTAGCAAACTATACCCCTCTTCATGCTCGAGCGGATCCTGATGAGTATGAGGATAAAAGGATCTCTAGGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATTCCTGATCATGCTCAGAGCTTTCACAAGGCAGTGGATGAAGATACAAGTAATAGATCCAGTTCTGGGTCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGTGCAGATGCAAGTGATCTGACAGGGCCCTCGCAGTCAACAGCATGGGAGGCAATAGTGCCTTCTAGAAAGAGGACCTGTGTTGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCAATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAATTCTCTGTAAATGAAGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTCAGAACAAGGTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTATTGGACAGGGGTTCTTGCAAGAGCAAATTAAAAGGCACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCGTAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAGAATCAGCAAGAACTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAACTTCCGGACAGCTTGAATAGCATGTTTGAGAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTGTCCGGGTGTAAAAAGAGAAGACTGCAAGACTTTGAGTAGGCTGGTCTTGTTGGATTTGTCAAAATCAAAATGGGTGGAGCGATATCATCTACTCAAGAAATTTAGTAGTGGAGAGTCTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTTATGAATGACAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACAAGGACTGCAATGAAAAGTCCCAAAAGGGTGATGACAAAGGCAAGCGTGGAAAGCAAGGAACTTGTGGACAGCGATGGTTCGTGCTTCAGTCCAAGAAGTTTATTCGCTTTGCCTTCTGATGGTGGTTCCTTCACACTGGAGTCTCTGCATTTCGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTTCTTCATCCACCCCTGAGTTTTGGTGCTCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCACTGA 1620 43.64 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDKRISRWKNLSMCKNKEVKLLKRKQYQDNGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAIVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEVHSESSILPVHYETQNKVVNFSTLGIGRKHSIGQGFLQEQIKRHRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSCPGVKREDCKTLSRLVLLDLSKSKWVERYHLLKKFSSGESVQGFAAASSSFMNDKRVLDGQNKKLSETRTAMKSPKRVMTKASVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPPLSFGAQQASNSSSSVNLRLMHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2859947 2866858 - CmPI595203_10g010680.1 Cmu10g1068 426598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1068 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1068 539 Pfam Asx homology domain 284 368 IPR028020 -
Cmu10g1068 539 Gene3D - 289 377 IPR038108 -
Cmu10g1068 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 369 IPR044589 -
Cmu10g1068 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1068 539 Gene3D - 3 83 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu10g1068 539 MobiDBLite consensus disorder prediction 110 124 - -
Cmu10g1068 539 MobiDBLite consensus disorder prediction 520 539 - -
Cmu10g1068 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1068 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cmu10g1068 539 MobiDBLite consensus disorder prediction 103 124 - -
Cmu10g1068 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g1068 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1068 Cmu-Chr10:2859947 Cmu09g1250 Cmu-Chr9:15118434 2.40E-201 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6935 PF13919 ASXH 2.20E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1068 - - - 0.0