Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1080 ATGATGTACGAACAGAGTAATGGCTGTGAATCCGATTTTGTTCTTTTGGAAACCATACGGCGCCATTTGTTGGGAGAATCCGACGCTTACCGATGTGGGAATTTCGCCCTGGCCGGAACCGCCTCGCCGGTTTTCTGCCGGAGCTCTAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTAAAAGAGGATGATTCCGAGGACATGGTCATCGCCGGCGTCCTCCGTGATGCCGTCAGTGTTGGTTGGGTTCCGTCGCTCGGCGCTTCGCCGTCGGATGCCTTCAATTTTGGGTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATATTGCCGGAAGTTAAGGTGGCGGCGGCGGCGGCGACGACGCCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTCCGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCAGCAAAAAACGGAGCTCGGGTTTGGCTTGGAACGTTTGAGACGGCGGAGGATGCGGCACTTGCTTATGACCGCGCCGCTTACCGAATGCGTGGCTCGAAAGCTCTTCTCAATTTCCCACTTCGAGTTAATTCGGGCGAACCCGACCCGGTTAGAGTGACATCGAAACGGTCATCGCCTCGATCGTCGCCAGAGCCTACTTCATCTTTGTCGTCGGTAGAGAGTGGGTCCCCTAAGCGGAGGAAGAAGGCGGACGGCACGGCAGTGACACCCGCTCTAGCTTCGCCGGAGTTGATTCAATTGGTGGTGGGGACCAGTGAATTGCAAGTGGAAGTTGGCGTGGCAAAGTGA 840 57.62 MMYEQSNGCESDFVLLETIRRHLLGESDAYRCGNFALAGTASPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVIAGVLRDAVSVGWVPSLGASPSDAFNFGFSDVKPEPEILPPVNILPEVKVAAAAATTPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGTAVTPALASPELIQLVVGTSELQVEVGVAK 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3014951 3015790 - CmPI595203_10g010800.1 Cmu10g1080 426610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1080 279 MobiDBLite consensus disorder prediction 210 252 - -
Cmu10g1080 279 SUPERFAMILY DNA-binding domain 145 205 IPR016177 GO:0003677(InterPro)
Cmu10g1080 279 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1080 279 SMART rav1_2 145 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1080 279 FunFam Ethylene-responsive transcription factor 2 144 204 - -
Cmu10g1080 279 Pfam AP2 domain 145 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1080 279 PANTHER DNA-BINDING DOMAIN 129 232 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cmu10g1080 279 MobiDBLite consensus disorder prediction 214 238 - -
Cmu10g1080 279 CDD AP2 144 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1080 279 Gene3D AP2/ERF domain 144 206 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1080 279 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1080 279 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0011 Cmu-Chr5:159810 Cmu10g1080 Cmu-Chr10:3014951 7.90E-25 dispersed
Cmu07g1666 Cmu-Chr7:32017847 Cmu10g1080 Cmu-Chr10:3014951 1.10E-36 dispersed
Cmu09g0738 Cmu-Chr9:7016129 Cmu10g1080 Cmu-Chr10:3014951 2.40E-23 dispersed
Cmu09g0739 Cmu-Chr9:7028368 Cmu10g1080 Cmu-Chr10:3014951 6.70E-20 dispersed
Cmu10g1080 Cmu-Chr10:3014951 Cmu10g1887 Cmu-Chr10:24147460 8.90E-19 dispersed
Cmu10g1080 Cmu-Chr10:3014951 Cmu10g1081 Cmu-Chr10:3043044 1.70E-25 tandem
Cmu01g0433 Cmu-Chr1:4453782 Cmu10g1080 Cmu-Chr10:3014951 7.50E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6936 PF00847 AP2 1.20E-14 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1080 K09286 - csv:101203663 434.491