Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1090 ATGGAAGATCCTCTTCACAGATTCCAGTTTCATTCTCAATCTTCATCTTCTTCTTCATCAGATATCAAAAATTGCATCAAAGAAAAAAACTCCAAGAAAGTTAAACTCGAAAACGACGGCAAACATCCTACCTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGTCATTCCGCTTACCTTAATTTCCCTGAATTAGCTCATCGTCTCCCTCGTCCTGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCCGCTAAAGCCGCTTCGTTTTCCACTAATAATCTTCTCGATTCCACTCACGATGATGATCTCAACTCCGCCGCCAAATCTGACCTCAATCTCAATCGCTCCCCTTCCTCCGCCGTTGCTGCCAAATCCTCCGGTGAAATTGACGATCCTTTCTTCGATCTCCCCGATCTGTTCCTTGATGATCCCAATCATCAAATTGATACATTCTGTTTCTCCCAATTTCTCCCTATTGACGGTTTCGACTCTGTTTTTACACTGCCGCCGTCGCCACCGTCTGATTGTTTCGCTTACAGAGGTAGCCTACTCTAG 672 46.43 MEDPLHRFQFHSQSSSSSSSDIKNCIKEKNSKKVKLENDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAASFSTNNLLDSTHDDDLNSAAKSDLNLNRSPSSAVAAKSSGEIDDPFFDLPDLFLDDPNHQIDTFCFSQFLPIDGFDSVFTLPPSPPSDCFAYRGSLL 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3178844 3179515 + CmPI595203_10g010900.1 Cmu10g1090 426620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1090 223 CDD AP2 45 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1090 223 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1090 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 184 IPR051032 -
Cmu10g1090 223 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677(InterPro)
Cmu10g1090 223 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Cmu10g1090 223 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1090 223 MobiDBLite consensus disorder prediction 1 43 - -
Cmu10g1090 223 SMART rav1_2 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1090 223 MobiDBLite consensus disorder prediction 25 43 - -
Cmu10g1090 223 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1090 223 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1090 223 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g1090 223 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0243 Cmu-Chr6:2695589 Cmu10g1090 Cmu-Chr10:3178844 4.00E-34 dispersed
Cmu08g0107 Cmu-Chr8:2063896 Cmu10g1090 Cmu-Chr10:3178844 3.40E-27 dispersed
Cmu08g0173 Cmu-Chr8:3727799 Cmu10g1090 Cmu-Chr10:3178844 6.30E-22 dispersed
Cmu10g1090 Cmu-Chr10:3178844 Cmu11g1516 Cmu-Chr11:27478290 7.60E-37 dispersed
Cmu10g1090 Cmu-Chr10:3178844 Cmu11g0216 Cmu-Chr11:2628146 1.20E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6940 PF00847 AP2 4.90E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1090 - - - 0.0